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docs/output.md
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* `output.raxml.support` A ML tree built with RAxML-NG with support values for branches based on bootstrapping
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### MultiQC
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Various quality statistics are compiled from the previous outputs using the [MultiQC](https://multiqc.info/) software:
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#### Overall Statistics
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A compilation of statistics about read content, mapping and variants
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Statistics gathered when mapping reads
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#### Varinat Statistics
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Statistics gathered when calling variants after filtering
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