always index fasta if no fasta_index

TCLamnidis · TCLamnidis · commit 92d8377d836a · 2023-11-01T12:19:49.000+01:00
diff --git a/main.nf b/main.nf
@@ -561,7 +561,7 @@ process makeFastaIndex {
             else null
     }
     
-    when: !params.fasta_index && params.fasta && ( params.mapper == 'bwaaln' || params.mapper == 'bwamem' || params.mapper == 'circularmapper')
+    when: !params.fasta_index && params.fasta
 
     input:
     path fasta from ch_fasta_for_faidx

Original file line number	Diff line number	Diff line change
`@@ -561,7 +561,7 @@ process makeFastaIndex {`
`561`	`561`	`else null`
`562`	`562`	`}`
`563`	`563`
`564`		`- when: !params.fasta_index && params.fasta && ( params.mapper == 'bwaaln' \|\| params.mapper == 'bwamem' \|\| params.mapper == 'circularmapper')`
	`564`	`+ when: !params.fasta_index && params.fasta`
`565`	`565`
`566`	`566`	`input:`
`567`	`567`	`path fasta from ch_fasta_for_faidx`