test_full.config

/*
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Nextflow config file for running full-size tests
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    Defines input files and everything required to run a full size pipeline test.

    Use as follows:
        nextflow run nf-core/hic -profile test_full,<docker/singularity> --outdir <OUTDIR>
----------------------------------------------------------------------------------------
*/

params {
    config_profile_name        = 'Full test profile'
    config_profile_description = 'Full test dataset to check pipeline function'

    // Input data for full size test
    input = 'https://raw.githubusercontent.com/nf-core/test-datasets/hic/samplesheet/samplesheet_HiC_mESC_full_test.csv'

    // Genome references
    genome = 'mm10'

    // Other options
    digestion = 'dpnii'
    bin_size = '40000,250000,500000,1000000'
    res_compartments = '500000,250000'
    res_tads = '40000,20000'

    //Ignore parameters with special validation
    schema_ignore_params = 'bin_size,res_dist_decay,res_tads,res_compartments'
}