Bump versions for release

Author: jfy133

.nf-core.yml

@@ -16,4 +16,4 @@ template:
   name: mag
   org: nf-core
   outdir: .
-  version: 3.3.2dev
+  version: 3.4.0

CHANGELOG.md

@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## 3.3.1dev [unreleased]
+## 3.4.0 [2025-04-02]
 
 ### `Added`
 

assets/multiqc_config.yml

@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/mag/tree/dev"
+  This report has been generated by the <a href="https://github.com/nf-core/mag/releases/tag/3.4.0"
   target="_blank">nf-core/mag</a> analysis pipeline. For information about how to
-  interpret these results, please see the <a href="https://nf-co.re/mag/dev/docs/output"
+  interpret these results, please see the <a href="https://nf-co.re/mag/3.4.0/docs/output"
   target="_blank">documentation</a>.
 report_section_order:
   "nf-core-mag-methods-description":

nextflow.config

@@ -488,7 +488,7 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'master'
     nextflowVersion = '!>=24.04.2'
-    version         = '3.3.2dev'
+    version         = '3.4.0'
     doi             = '10.1093/nargab/lqac007'
 }