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[question] does it matter what type of assembly I use? long, short, both?

Status: Open.

#247 In nf-core/pangenome;

· JWDebler opened on May 25, 2025

Run pipeline with vg deconstruct parameters CI action takes too long

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#245 In nf-core/pangenome;

· heuermh opened on Apr 30, 2025

JSON schema: Pangenome

Status: Open.

#242 In nf-core/pangenome;

· jen-reeve opened on Mar 25, 2025

Adding input files for Panache

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#197 In nf-core/pangenome;

· mictadlo opened on Apr 11, 2024

Adding jbrowse visualization

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#196 In nf-core/pangenome;

· mictadlo opened on Apr 11, 2024

Compile SMOOTHXG for several kinds of SIMD flavours

advanced

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#190 In nf-core/pangenome;

· subwaystation opened on Mar 15, 2024

Towards IMplicit Pangenome Graph Construction Tools

advanced

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#189 In nf-core/pangenome;

· subwaystation opened on Mar 15, 2024

automatically detect the number of input haplotypes

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#158 In nf-core/pangenome;

· subwaystation opened on Oct 27, 2023

assume pansn-spec in wfmash parameters to enfoce lower-triangular mapping

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#156 In nf-core/pangenome;

· subwaystation opened on Oct 27, 2023

Integrate <code>panacus</code> as a quantitative quality control tool and pangenome growth curve generator

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#151 In nf-core/pangenome;

· subwaystation opened on Sep 6, 2023

Check if input sequence identifiers follow the PanSN-Spec

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#139 In nf-core/pangenome;

· subwaystation opened on Aug 17, 2023

Use <code>grabix</code> to detect compression mode of FASTA input.

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#121 In nf-core/pangenome;

· subwaystation opened on Apr 17, 2023