Skip to content

Deactivate the publishing of unmapped bam files #644

@sofstam

Description

@sofstam

Description of the bug

In the long-read host removal, the publishing of unmapped bam files should be actively deactivated. The modules.config looks like:


 withName: SAMTOOLS_VIEW {
        ext.args = '-f 4'
        ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" }
    }

James screenshot:

Image

Command used and terminal output

Relevant files

No response

System information

No response

Metadata

Metadata

Assignees

No one assigned

    Labels

    bugSomething isn't working

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions