Release v3.3.2

What's Changed

• GHA remove Python 3.8 by @blowekamp in #112
• Fix line wrapping in neruglancer gray shader by @blowekamp in #113
• Update simpleitk requirement from ~=2.4.0 to ~=2.5.0 by @dependabot in #111
• Detect Brightfield flour for channels as potentially RGB by @blowekamp in #114
• Use OME XML IlluminationType to detect fluorescence as multichannel by @blowekamp in #115
• Add notebook used to protype new czi files by @blowekamp in #116
• Add testing for xml meta-data by @blowekamp in #117

Full Changelog: v3.3.1...v3.3.2

Release v3.3.1

What's Changed

• Update simpleitk requirement from ~=2.3.0 to ~=2.4.0 by @dependabot in #109
• Set zarr requirements to 2.x by @blowekamp in #110

Full Changelog: v3.3.0...v3.3.1

Release v3.3.0

What's Changed

• Add compute parameters by @blowekamp in #108

Full Changelog: v3.2.0...v3.3.0

Release v3.2.0

What's Changed

• Set spacing in HedwigZarrImage.extract_2d by @blowekamp in #92
• Add Jupyter notebooks for registration and visualization by @blowekamp in #93
• Update command line docs to current utilities by @blowekamp in #95
• Add utility functions for visualizing ZARR images in Neroglancer by @blowekamp in #94
• Use increase-if-necessary versioning strategy by @blowekamp in #98
• Bump actions/cache from 3 to 4 by @dependabot in #102
• Bump actions/checkout from 3 to 4 by @dependabot in #100
• Bump actions/download-artifact from 3 to 4 by @dependabot in #101
• Bump actions/upload-artifact from 3 to 4 by @dependabot in #103
• Bump actions/setup-python from 4 to 5 by @dependabot in #104
• Fix doc formatting for weighted_quantile by @blowekamp in #105
• Update simpleitkutilities requirement from ~=0.2.0 to ~=0.3.0 by @dependabot in #99
• ROI Data Classes by @blowekamp in #106
• Remove mrc2nifti commandline. by @blowekamp in #96
• Add is_16bit method by @blowekamp in #107

New Contributors

• @dependabot made their first contribution in #102

Full Changelog: v3.1.1...v3.2.0

Release v3.1.1

What's Changed

• Fix typo in Flour used to detect non RGB by @blowekamp in #91

Full Changelog: v3.1...v3.1.1

Release v3.1

What's Changed

• Add option to rechunk to load array into memory by @blowekamp in #90

Full Changelog: v3.0...v3.1

Release v3.0

What's Changed

• Add zarr_extract_2d to help generate thumbnail images from OME-NGFF ZARR by @blowekamp in #62
• Update to published 0.2 version of SimpleITKUtilities by @blowekamp in #63
• Fix turfflehog pip version syntax by @blowekamp in #66
• Add zarr test data by @blowekamp in #68
• Implement HedwigZarrImages classes by @blowekamp in #65
• add testing for HedwigZarrImage::rechunk method by @blowekamp in #70
• Fix maybe rgb iterleaved by @blowekamp in #69
• Add sample zarr of tiff converted to zarr by @blowekamp in #71
• Add compressor option to rechunking by @blowekamp in #72
• Update docs for precommit usage by @blowekamp in #74
• Update tests for hedwingZarrImage.zarr_rechunk by @annshress in #73
• exclude fspec 2023.9.0 version by @blowekamp in #77
• Add CZI IF data by @blowekamp in #76
• Add test for bad .zarr file with missing OME xml by @annshress in #75
• Add czi tests by @annshress in #78
• Update requirements to SimpleITK 2.3.0 by @blowekamp in #79
• Fixes dtype('>u2') key error when extracting 2d image by @blowekamp in #82
• Add dependabot.yml by @blowekamp in #84
• Fix dependabot.yml location by @blowekamp in #85
• Raise detailed exception with unsupported channel information by @blowekamp in #83
• Add exception when duplicate series zarr paths are detected. by @blowekamp in #86
• Swap the range and window values by @blowekamp in #87
• Quantiles parameters by @blowekamp in #88
• Only one job upload python wheel in gha by @blowekamp in #80
• Fix GHA and syntax by @blowekamp in #89

New Contributors

• @annshress made their first contribution in #73

Full Changelog: v2.0.0...v3.0

Release v3.0b04

What's Changed

• Quantiles parameters by @blowekamp in #88

Full Changelog: v3.0b03...v3.0b04

Release v3.0b03

What's Changed

• Add exception when duplicate series zarr paths are detected. by @blowekamp in #86
• Swap the range and window values by @blowekamp in #87

Full Changelog: v3.0b02...v3.0b03

Release v3.0b02

What's Changed

• Fixes dtype('>u2') key error when extracting 2d image by @blowekamp in #82
• Add dependabot.yml by @blowekamp in #84
• Fix dependabot.yml location by @blowekamp in #85
• Raise detailed exception with unsupported channel information by @blowekamp in #83

Full Changelog: v3.0b01...v3.0b02