Update README.md

Author: nicholascwho

HNSCC CAF States HA 2023/README.md

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 # HNSCC CAF States HA 2023
 Data-driven design of tunable hydrogels recapitulate fibroblast heterogeneity in cancer, [in preparation].
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+1. 230906 CAF States sc- and bulk RNA-seq Code.R
+   Script used to analyze single cell and bulk RNA-seq data
+2. ARACNe-AP_bulk_script.sh
+   Script used to run ARACNe-AP for bulk RNA-seq data
+3. ARACNe-AP_sc_script.sh
+   Script used to run ARACNe-AP for scRNA-seq data
+4. Cell_Shape_.ijm
+   Batch plugin to analyze cell morphology based on actin and nuclear stains
+5. NATMI_script.sh
+   Script used to run NATMI for scRNA-seq data
+6. pySCENIC_script.sh
+   Script used to run pySCENIC for scRNA-seq data