DiffSimViz #37
Description
Title
DiffSimViz
Short description and the goals for the OHBM BrainHack
DiffSimViz (Diffusion Simulator Visualizer) will be a python toolbox with the aim of providing intuitive visualizations of particle diffusion in different media/microstructure. This will ideally include an interface to choose particular media to visualize diffusion within, as well as to change parameters such as diffusion time and membrane permeability. The use of such a visualizer will be didactic, or for researchers to better understand what their diffusion MRI signal might look like in particular microstructural environments.
Link to the Project
https://github.com/Bradley-Karat/DiffSimViz
Image for the OHBM brainhack website
No response
Project lead
Bradlet Karat, Github: @Bradley-Karat, Discord: brad_karat
Main Hub
Montreal
Other Hub covered by the leaders
- Montreal
- Asia / Pacific
- Europe / Middle East / Africa
- Americas
Skills
- Python
- Diffusion MRI
- Visualization generation
Recommended tutorials for new contributors
- Set up a brainhack friendly computing environment
- A introduction to Bash
- Python: Writing a script
- Python: Data analysis with Python
- Python: Visualisation
- Machine learning basics
- BIDS
- Machine learning for neuroimaging
- VCS: Using Git and Github
- VCS: Data management with Datalad
- Virtualization
- High Performance Computing: Oracle cloud resource
Good first issues
No response
Twitter summary
No response
Short name for the Discord chat channel (~15 chars)
DiffSimViz
Please read and follow the OHBM Code of Conduct
- I agree to follow the OHBM Code of Conduct during the hackathon