Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Building forcebalance for python 3.7 #924

Open
jchodera opened this issue Dec 9, 2018 · 1 comment
Open

Building forcebalance for python 3.7 #924

jchodera opened this issue Dec 9, 2018 · 1 comment

Comments

@jchodera
Copy link
Member

jchodera commented Dec 9, 2018

We're having some trouble building the forcebalance 1.5.5 package for Python 3.7.

Currently, the build fails with this message:

gcc -pthread -shared -Wl,-rpath,/opt/conda/conda-bld/forcebalance_1544321522947/_b_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib -L/opt/conda/conda-bld/forcebalance_1544321522947/_b_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib -fuse-linker-plugin -ffat-lto-objects -flto-partition=none -g -Wl,-rpath,/opt/conda/conda-bld/forcebalance_1544321522947/_b_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib -L/opt/conda/conda-bld/forcebalance_1544321522947/_b_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/lib build/temp.linux-x86_64-3.7/ext/molfile_plugin/dcdplugin_s.o -lm -o build/lib.linux-x86_64-3.7/forcebalance/_dcdlib.cpython-37m-x86_64-linux-gnu.so
gcc: error: -fuse-linker-plugin is not supported in this configuration
error: command 'gcc' failed with exit status 1

@j-wags @leeping: Any ideas what might be going on? Perhaps we just need to pin a gcc version in the recipe?

@leeping
Copy link
Contributor

leeping commented Dec 9, 2018

Hi John,

Thanks. I honestly have no idea what's happening. I don't remember that compiler flag being important in building that part of the module. The very long path with placehold_placehold_... looks suspicious, because I see no such thing when I install ForceBalance locally (using conda or setup.py), but it might also be unrelated. I also see that the log involves building and installing several packages in the omnia repo and I wonder if that might be related.

Is there any way I could try to reproduce the problem on my end?

Thanks,

  • Lee-Ping

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants