Create paper.bib

Author: jponnela

paper/paper.bib

@@ -0,0 +1,308 @@
+@article{pelligrini2021estimating,
+  title={Estimating longitudinal depressive symptoms from smartphone data in a transdiagnostic cohort},
+  author={AM Pellegrini, EJ Huang, PC Staples, KL Hart, JM Lorme, HE Brown, RH Perlis, and JP Onnela},
+  journal={Brain and Behavior},
+  year={2021},
+  publisher={Wiley-Blackwell}
+}
+
+@article{fortgang2020increase,
+  title={Increase in suicidal thinking during COVID-19},
+  author={R Fortgang, SB Wang, AJ Millner, A Reid-Russell, A Beukenhorst, EM Kleiman, KH Bentley, KL Zuromski, M Al-Suwaidi, SA Bird, R Buonopane, D Demarco, A Haim, VW Joyce, E Kastman, E Kilbury, H-I Lee, P Mair, CC Nash, JP Onnela, JW Smoller, and MK Nock},
+  journal={Clinical Psychological Science},
+  year={2020},
+  publisher={SAGE Publishing},
+  doi={10.1177/2167702621993857}
+  }
+
+@article{beukenhorst2021smartphone,
+  title={Smartphone data during the COVID-19 pandemic can quantify behavioral changes in people with ALS},
+  author={Beukenhorst, Anna L and Collins, Ella and Burke, Katherine M and Rahman, Syed Minhajur and Clapp, Margaret and Konanki, Sai Charan and Paganoni, Sabrina and Miller, Timothy M and Chan, James and Onnela, Jukka-Pekka and others},
+  journal={Muscle \& nerve},
+  volume={63},
+  number={2},
+  pages={258--262},
+  year={2021},
+  publisher={Wiley Online Library},
+  doi={10.1002/mus.27110}
+}
+
+@article{mercier2020digital,
+  title={Digital Phenotyping to Quantify Psychosocial Well-Being Trajectories After Spinal Cord Injury},
+  author={Mercier, Hannah W and Hamner, Jason W and Torous, John and Onnela, Jukka Pekka and Taylor, J Andrew},
+  journal={American Journal of Physical Medicine \& Rehabilitation},
+  volume={99},
+  number={12},
+  pages={1138--1144},
+  year={2020},
+  publisher={LWW},
+  doi={10.1097/phm.0000000000001506}
+}
+
+@article{panda2021smartphone,
+  title={Smartphone-Based Assessment of Preoperative Decision Conflict and Postoperative Physical Activity Among Patients Undergoing Cancer Surgery: A Prospective Cohort Study},
+  author={Panda, Nikhil and Solsky, Ian and Cauley, Christy E and Lipsitz, Stuart and Desai, Eesha V and Huang, Emily J and Benjamin, Evan M and Lubitz, Carrie C and Onnela, Jukka-Pekka and Haynes, Alex B},
+  journal={Annals of Surgery},
+  year={2021},
+  publisher={LWW},
+  doi={10.1097/SLA.0000000000004487}
+}
+
+@article{panda2020smartphone,
+  title={Smartphone global positioning system (GPS) data enhances recovery assessment after breast cancer surgery},
+  author={Panda, Nikhil and Solsky, Ian and Hawrusik, Becky and Liu, Gang and Reeder, Harrison and Lipsitz, Stuart and Desai, Eesha V and Lowery, Kurt W and Miller, Kate and Gadd, Michele A and others},
+  journal={Annals of Surgical Oncology},
+  pages={1--10},
+  year={2020},
+  publisher={Springer},
+  doi={10.1245/s10434-020-09004-5}
+}
+
+@article{panda2020using,
+  title={Using smartphones to capture novel recovery metrics after cancer surgery},
+  author={Panda, Nikhil and Solsky, Ian and Huang, Emily J and Lipsitz, Stuart and Pradarelli, Jason C and Delisle, Megan and Cusack, James C and Gadd, Michele A and Lubitz, Carrie C and Mullen, John T and others},
+  journal={JAMA surgery},
+  volume={155},
+  number={2},
+  pages={123--129},
+  year={2020},
+  publisher={American Medical Association},
+  doi={10.1001/jamasurg.2019.4702}
+}
+
+@article{berry2019design,
+  title={Design and results of a smartphone-based digital phenotyping study to quantify ALS progression},
+  author={Berry, James D and Paganoni, Sabrina and Carlson, Kenzie and Burke, Katherine and Weber, Harli and Staples, Patrick and Salinas, Joel and Chan, James and Green, Jordan R and Connaghan, Kathryn and others},
+  journal={Annals of clinical and translational neurology},
+  volume={6},
+  number={5},
+  pages={873--881},
+  year={2019},
+  publisher={Wiley Online Library},
+  doi={10.1002/acn3.770}
+}
+
+@article{cote2019digital,
+  title={Digital phenotyping in patients with spine disease: a novel approach to quantifying mobility and quality of life},
+  author={Cote, David J and Barnett, Ian and Onnela, Jukka-Pekka and Smith, Timothy R},
+  journal={World neurosurgery},
+  volume={126},
+  pages={e241--e249},
+  year={2019},
+  publisher={Elsevier},
+  doi={10.1016/j.wneu.2019.01.297}
+}
+
+@article{torous2018characterizing,
+  title={Characterizing the clinical relevance of digital phenotyping data quality with applications to a cohort with schizophrenia},
+  author={Torous, John and Staples, Patrick and Barnett, Ian and Sandoval, Luis R and Keshavan, Matcheri and Onnela, Jukka-Pekka},
+  journal={NPJ digital medicine},
+  volume={1},
+  number={1},
+  pages={1--9},
+  year={2018},
+  publisher={Nature Publishing Group},
+  doi={10.1038/s41746-018-0022-8}
+}
+
+@article{wright2018hope,
+  title={The HOPE pilot study: harnessing patient-reported outcomes and biometric data to enhance cancer care},
+  author={Wright, Alexi A and Raman, Nikita and Staples, Patrick and Schonholz, Stephanie and Cronin, Angel and Carlson, Kenzie and Keating, Nancy L and Onnela, Jukka-Pekka},
+  journal={JCO clinical cancer informatics},
+  volume={2},
+  pages={1--12},
+  year={2018},
+  publisher={American Society of Clinical Oncology},
+  doi={10.1200/cci.17.00149}
+}
+
+@article{barnett2018relapse,
+  title={Relapse prediction in schizophrenia through digital phenotyping: a pilot study},
+  author={Barnett, Ian and Torous, John and Staples, Patrick and Sandoval, Luis and Keshavan, Matcheri and Onnela, Jukka-Pekka},
+  journal={Neuropsychopharmacology},
+  volume={43},
+  number={8},
+  pages={1660--1666},
+  year={2018},
+  publisher={Nature Publishing Group},
+  doi={10.1038/s41386-018-0030-z}
+}
+
+@article{staples2017comparison,
+  title={A comparison of passive and active estimates of sleep in a cohort with schizophrenia},
+  author={Staples, Patrick and Torous, John and Barnett, Ian and Carlson, Kenzie and Sandoval, Luis and Keshavan, Matcheri and Onnela, Jukka-Pekka},
+  journal={NPJ schizophrenia},
+  volume={3},
+  number={1},
+  pages={1--6},
+  year={2017},
+  publisher={Nature Publishing Group},
+  doi={10.1038/s41537-017-0038-0}
+}
+
+@article{onnela2016harnessing,
+  title={Harnessing smartphone-based digital phenotyping to enhance behavioral and mental health},
+  author={Onnela, Jukka-Pekka and Rauch, Scott L},
+  journal={Neuropsychopharmacology},
+  volume={41},
+  number={7},
+  pages={1691--1696},
+  year={2016},
+  publisher={Nature Publishing Group},
+  doi={10.1038/npp.2016.7}
+}
+
+@article{torous2016new,
+  title={New tools for new research in psychiatry: a scalable and customizable platform to empower data driven smartphone research},
+  author={Torous, John and Kiang, Mathew V and Lorme, Jeanette and Onnela, Jukka-Pekka},
+  journal={JMIR mental health},
+  volume={3},
+  number={2},
+  pages={e16},
+  year={2016},
+  publisher={JMIR Publications Inc., Toronto, Canada},
+  doi={10.2196/mental.5165}
+}
+
+@article{houle2010phenomics,
+  title={Phenomics: the next challenge},
+  author={Houle, David and Govindaraju, Diddahally R and Omholt, Stig},
+  journal={Nature reviews genetics},
+  volume={11},
+  number={12},
+  pages={855--866},
+  year={2010},
+  publisher={Nature Publishing Group},
+  doi={10.1038/nrg2897}
+}
+
+@article{delude2015deep,
+  title={Deep phenotyping: the details of disease},
+  author={Delude, Cathryn M},
+  journal={Nature},
+  volume={527},
+  number={7576},
+  pages={S14--S15},
+  year={2015},
+  publisher={Nature Publishing Group},
+  doi={10.1038/527S14a}
+}
+
+@article{bilder2009phenomics,
+  title={Phenomics: the systematic study of phenotypes on a genome-wide scale},
+  author={Bilder, Robert M and Sabb, FW and Cannon, TD and London, ED and Jentsch, JD and Parker, D Stott and Poldrack, Russell A and Evans, C and Freimer, NB},
+  journal={Neuroscience},
+  volume={164},
+  number={1},
+  pages={30--42},
+  year={2009},
+  publisher={Elsevier},
+  doi={10.1016/j.neuroscience.2009.01.027}
+}
+
+@article{robinson2012deep,
+  title={Deep phenotyping for precision medicine},
+  author={Robinson, Peter N},
+  journal={Human mutation},
+  volume={33},
+  number={5},
+  pages={777--780},
+  year={2012},
+  publisher={Wiley Online Library},
+  doi={10.1002/humu.22080}
+}
+
+@article{mora2017edaravone,
+  title={Edaravone for treatment of early-stage ALS},
+  author={Mora, Jes{\'u}s S},
+  journal={The Lancet Neurology},
+  volume={16},
+  number={10},
+  pages={772},
+  year={2017},
+  publisher={Elsevier},
+  doi={10.1016/S1474-4422(17)30289-2}
+}
+
+@article{berry2019design,
+  title={Design and results of a smartphone-based digital phenotyping study to quantify ALS progression},
+  author={Berry, James D and Paganoni, Sabrina and Carlson, Kenzie and Burke, Katherine and Weber, Harli and Staples, Patrick and Salinas, Joel and Chan, James and Green, Jordan R and Connaghan, Kathryn and Barback, Josh and Onnela, Jukka-Pekka},
+  journal={Annals of clinical and translational neurology},
+  volume={6},
+  number={5},
+  pages={873--881},
+  year={2019},
+  publisher={Wiley Online Library},
+  doi={10.1002/acn3.770}
+}
+
+@article{straczkiewicz2021systematic,
+  title={A systematic review of smartphone-based human activity recognition methods for health research},
+  author={Straczkiewicz, Marcin and James, Peter and Onnela, Jukka-Pekka},
+  journal={NPJ Digital Medicine},
+  volume={4},
+  number={1},
+  pages={1--15},
+  year={2021},
+  publisher={Nature Publishing Group},
+  doi={10.1038/s41746-021-00514-4}
+}
+
+@misc{wiki_sensing,
+  title={Mobile phone based sensing software},
+  year={2021},
+  howpublished={\emph{Wikipedia}. Accessed November 10, 2021 [Online]},
+  url={https://en.wikipedia.org/wiki/Mobile_phone_based_sensing_software}
+}
+
+@misc{github_ears,
+  title={EARS-iOS-Public},
+  year={2020},
+  publisher={GitHub},
+  journal={GitHub repository},
+  url={https://github.com/C4DMH/EARS-iOS-Public}
+  }
+
+@article{onnela2021opportunities,
+  title={Opportunities and challenges in the collection and analysis of digital phenotyping data},
+  author={Onnela, Jukka-Pekka},
+  journal={Neuropsychopharmacology},
+  volume={46},
+  number={1},
+  pages={45--54},
+  year={2021},
+  publisher={Nature Publishing Group},
+  doi = {10.1038/s41386-020-0771-3}
+}
+
+@misc{researchkit,
+  author={{ResearchKit}},
+  title={ResearchKit Framework Programming Guide},
+  year={2018},
+  howpublished={Accessed November 10, 2021 [Online]}, 
+  url={http://researchkit.org/docs/docs/Overview/GuideOverview.html}
+}
+
+@misc{sensorkit,
+  author={{Apple Developer}},
+  title={SensorKit Documentation},
+  year={2020},
+  howpublished={Accessed November 10, 2021 [Online]}, 
+  url={https://developer.apple.com/documentation/sensorkit/srsensor#3681604}
+}
+
+@misc{cmsensor,
+  author={{Apple Developer}},
+  title={Core Motion Documentation},
+  year={2020},
+  howpublished={Accessed November 10, 2021 [Online]}, 
+  url={https://developer.apple.com/documentation/coremotion/cmsensorrecorder/1615987-recordaccelerometer}
+}
+
+@misc{sensorkit_stepcount,
+  author={{Apple Developer}},
+  title={SensorKit Documentation},
+  year={2020},
+  howpublished={Accessed November 10, 2021 [Online]}, 
+  url={https://developer.apple.com/documentation/healthkit/hkquantitytypeidentifier/1615548-stepcount}
+}