Merge pull request #18 from Raphael-Gazzotti/v1-logo

Update README.md and logo - branch v1

Author: lzehl

README.md

@@ -1,17 +1,71 @@
-<a href="/img/light_openMINDS-specimenPrep-logo.png">
-    <img src="/img/light_openMINDS-specimenPrep-logo.png" alt="openMINDS specimenPrep logo" title="openMINDS specimen preparation" align="right" height="70" />
+<a href="/img/openMINDS-specimenPrep_logo_light.png">
+  <picture>
+    <source media="(prefers-color-scheme: dark)" srcset="/img/openMINDS-specimenPrep_logo_dark.png">
+    <source media="(prefers-color-scheme: light)" srcset="/img/openMINDS-specimenPrep_logo_light.png">
+    <img alt="openMINDS specimenPrep metadata model" src="/img/openMINDS-specimenPrep_logo_light.png" title="Logo created by U. Schlegel, L. Zehl, C. Hagen Blixhavn" align="right" height="70">
+  </picture>
 </a>
 
 # openMINDS_specimenPrep
 
+[![GitHub][license-shield]][license-url]
+[![GitHub contributors][contributors-shield]][contributors-url]
+
 The **openMINDS_specimenPrep** repository is part of the **open** **M**etadata **I**nitiative for **N**euroscience **D**ata Structures (**openMINDS**). It extends openMINDS, by providing metadata schemas for in-depth descriptions of specimen preparations (surgery, tissue slicing, etc.).
 
-For more information please go to the [main openMINDS repository](https://github.com/HumanBrainProject/openMINDS).
+To generally learn more about the openMINDS metadata framework please go to :arrow_right: [**ReadTheDocs**][docu-url].  
+There you can also explore directly the :arrow_right: [**openMINDS_specimenPrep schema specifications**][docu-specimenPrep-url].
+
+## How to cite
+
+For specifically referencing the openMINDS_specimenPrep metadata model, please use the following RRID Portal record:  
+```
+openMINDS specimenPrep metadata model (RRID:SCR_026252)
+```
+
+Please reference in addition openMINDS in general, using our main RRID Portal record:  
+```
+openMINDS metadata framework (RRID:SCR_023173)
+```
 
 ## How to contribute
-Please check our [contribution document](https://github.com/HumanBrainProject/openMINDS/blob/main/CONTRIBUTING.md).
 
-## License
-This work is licensed under the MIT License.
+The openMINDS metadata framework is an open-source project and community contributions are highly appreciated. If you want to contribute please follow our :arrow_right: [**contribution guidelines**][contribution-url].
+
+Schema contributions to openMINDS_specimenPrep should be raised and discussed on the :arrow_right: [**issue tracker**][issuetracker-specimenPrep]  
+
+General usage questions should be raised and discussed in our :arrow_right: [**community forum**][community-forum].  
+Alternatively you can email us: `[email protected]`
+
+## Funding and acknowledgements
+
+The openMINDS metadata framework development started in the [Human Brain Project (HBP)][hbp-website], funded from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Specific Grant Agreements [SGA-1 (No.720270)][hbp-sga1-doi], [SGA-2 (No.785907)][hbp-sga2-doi], and [SGA-3 (No. 945539)][hbp-sga3-doi]. 
+
+The framework is further developed as part of the EBRAINS 2.0 project, funded from the European Union's Research and Innovation Program Horizon Europe under Grant Agreement [GA (No.101147319)][ebrains2-doi].
+
+The framework also receives support from the [BigBrain Project](https://bigbrainproject.org/), funded by [HIBALL][hiball-url].
+
+## Collaboration partners
+
+The openMINDS metadata framework is closely collaborating with the [InterLex Project][interlex-dashboard] of the [SciCrunch Data and Resource Infrastructure][scicrunch-website] and the [KnowledgeSpace][ks-website] hosted by the [International Neuroinformatics Coordinating Facility (INCF)][incf-website].
 
-**Logo:** The openMINDS logo was created by U. Schlegel, based on an original sketch by C. Hagen Blixhavn and feedback by L. Zehl.
+[community-forum]: https://neurostars.org/t/about-the-openminds-category/31428
+[contribution-url]: https://openminds-documentation.readthedocs.io/en/latest/shared/contribution_guidelines.html
+[contributors-url]: https://github.com/openMetadataInitiative/openMINDS_specimenPrep/graphs/contributors
+[contributors-shield]: https://img.shields.io/github/contributors/openMetadataInitiative/openMINDS_specimenPrep
+[docu-url]: https://openminds-documentation.readthedocs.io
+[docu-specimenPrep-url]: https://openminds-documentation.readthedocs.io/en/v3.0/schema_specifications/specimenPrep.html
+[ebrains2-doi]: https://doi.org/10.3030/101147319
+[hiball-url]: https://bigbrainproject.org/hiball.html
+[hbp-sga1-doi]: https://doi.org/10.3030/720270
+[hbp-sga2-doi]: https://doi.org/10.3030/785907
+[hbp-sga3-doi]: https://doi.org/10.3030/945539
+[hbp-website]: https://www.humanbrainproject.eu
+[incf-website]: https://www.incf.org
+[interlex-dashboard]: https://scicrunch.org/scicrunch/interlex/dashboard
+[issuetracker-specimenPrep]: https://github.com/openMetadataInitiative/openMINDS_specimenPrep/issues
+[issuetracker-main]: https://github.com/openMetadataInitiative/openMINDS/issues
+[ks-website]: https://knowledge-space.org
+[license-url]: https://raw.githubusercontent.com/openMetadataInitiative/openMINDS_specimenPrep/v1/LICENSE
+[license-shield]: https://img.shields.io/github/license/openMetadataInitiative/openMINDS_specimenPrep
+[scicrunch-website]: https://scicrunch.org