List of Errors and Improvements

[beniroquai]

• have external plugins equipped with react code

• objective set position not working properly

• Keep states on front page while going through the side controllers (see imjoy - render always / hide?)

• localhost:8001 should redirect to imswitch

• Loading bar in experiment controller

• restart imswitch

• lightsheet needs liveview

• double-check manual vs auto settings in hik exposure/gain => when going from manual to auto and back to manual the values won't work anymore - maybe even crash?

• Stop if memory is full #93

• Scaling of min/max on frontend instead? https://chatgpt.com/c/6802138a-2800-8011-83e7-49ffda6a9b64

• lcd als calibration target

• Keep Position before honing, move back

• match experiment settings with hardware in wellplate controller frontend

• close and solve all issues

• ensure GUI settings for experiment are matching the controller

• faster download of files without fastapi?

• stepsizes in frontpage should be kept when swithcing tabs

• For certain controllers the mainviewer should remain at this very location?

• Snap image with name

• forcerestart esp

• improve calibration routine

• stresstest for CAN controller XYZA

• - [ ] package external plugins incl react endpoints and make them chatgpt ready so that people can fully customize their one button click experience

• # embed_kernel() for interactive usage of notebook?

• Histogram correctly displayed @jhsros

• restarting docker service

• landing page for fs and dozzle and cockpit -> maybe adding app?

• dirtools.py is a mess - the different paths are not matching and don't make sense

• play/stop stream button is not in correct state on reload

• slices for illumination correct?

• objective toggle buttons should display magnification

• Wellplate: Illumination in live view visible

• Wellplate: Naming => tifffile

• wellpalte prview stitch

• wellpalte: display file location

• implement autofocus

• horizontal stitching with only y=1 doesn't load in Fiji

• switching configs doesn't free cache in browser and provides wrong illumination parameters

• Firmware: When Moving to Slot 1 and then moving objective by joystick and then again to slot 1 or 2, something fishy is going on - maybe speed is not set to zero on master side? Probably simply disable motor axis a on joytick entirely!

• initial gain/exposure/blacklevel do not match device parameters (not gui, probably not backend either)

• Safe MEtadata in TIF

• max of led should be 255

• improve XY Speed

• initial z-position should not be 0

• Info übe erfolgreiche Dateispeicherung (flash)

• Link zum Bild in den Speicherordner (File Manager oder Als download?

• einen ordner für Snap, Workflow, Timelpase,...

• loading bar that the objective lens is moving to a new state/position

• while moving, positionupdates every 10000 steps?

• Re-enable Stitched preview of tiles

• jupyter link / port https not working..

• Load API on page load - mismatch, need to set ip first..

• first load of liveview: sometimes 5th axis appears without settings

• first load of liveview: intensities of lasers are 0

• error in list of experiment designer - values vs. str. values

• Fully implement experiment designer in plotly

• restructure configfiletools.py

• deal with localhost vs public domain with ssl

• visualize stitched result somewhere

• ToDo's for First Product Launch ImSwitch-ReactAPP#11

• Homing auf 0 Position => go back to origin or zero position (X=70500mum, Y= 36580)

• Google Maps Inifinty scanning, Zero Position

• correct stepsize ( origin) for infinite scanning)

• Google Maps halt when leaving tab

• package fonts offline

• Parameter Editor not functional

• Joystick https://chatgpt.com/share/67e47bc9-c238-8011-802f-90a0dc998329 (Source

• moving to camera and marking point should be possible in one tab
  marking a position in the live stream should also be possible and be reflected on the wellplate layout

• include vtk viewer
• When histogram is on, something cannot keep up with frames - they build up and display is retarded .. probably too many signals from backend side
• affine transformation on camera vs stage coordinates
• automatically install pip packages if not available
• A way to decide which tif to store in the experimentcontroller
• [16/06, 15:12] Jacopo Abramo: next step: refactor the entire imswitch codebase with type hinting and ruff formatting
  [16/06, 15:13] Jacopo Abramo: and docs rework
• We need to update the stage offset right after we set it in the gui (need to be propagated
• The objective controller and its gui are pretty weird
• pixelsize in the liveview has to be updated
• cannot set negative values for the objective lens positions?!
• in react sometimes there appears a 0th axis for no reason
• homing on slave is broken if the trigger comes too fast (probably within first cycle
• pixel calibration widget
• filemanager should list files in alphabetic order
• delete zip after download file manager
• direclty list files not as icons,
• Standalone client with autodescover in an electron app and arkitekt connection
• better selection of icons
• status bar reflects current app/ controller
• realtime image mosaicing
• google-maps like exploration
• proper metre data management using available libraries that store these information in tiff and ome
• Enable Daheng on Mac? https://chatgpt.com/share/685f7a28-861c-8011-870f-47c5a1f3539f
• switch to uv