installation failed

[LabSR-UT]

Hi,

I can not install this package in Colab neither locally, after following instructions:
Colab
%pip install -e 'git+https://github.com/openlandmap/scikit-map#egg=scikit-map[full]'
it shows this error:
ModuleNotFoundError: No module named 'skmap'

Also locally (with Anaconda Python), it did not work either:
C:\Anaconda3>pip install skmap
ERROR: Could not find a version that satisfies the requirement skmap (from versions: none)
ERROR: No matching distribution found for skmap

Any suggestion?

Thanks in advance,

[olegsson]

Hello,

scikit-map does not currently pull all the required dependencies, it is generally recommended to preinstall them via conda. However, I'm getting the same error from Colab even with preinstalled dependencies, can look into it some more.

Local install, however, seems to work (with the same Python version that's currently running on Colab). Please try the following with your local conda install and let us know if it worked:

conda create -n skmap python==3.11.12 scikit-learn numpy rasterio geopandas joblib
conda activate skmap
pip install -e 'git+https://github.com/openlandmap/scikit-map#egg=scikit-map[full]'

[LabSR-UT]

Hi,

After following your instructions for local installation, it throws this error:

DEPRECATION: 'git+https://github.com/openlandmap/scikit-map#egg=scikit-map[full]' contains an egg fragment with a non-PEP 508 name. pip 25.2 will enforce this behaviour change. A possible replacement is to use the req @ url syntax, and remove the egg fragment. Discussion can be found at pypa/pip#13157
ERROR: 'git+https://github.com/openlandmap/scikit-map#egg=scikit-map[full]' is not a valid editable requirement. It should either be a path to a local project or a VCS URL (beginning with bzr+http, bzr+https, bzr+ssh, bzr+sftp, bzr+ftp, bzr+lp, bzr+file, git+http, git+https, git+ssh, git+git, git+file, hg+file, hg+http, hg+https, hg+ssh, hg+static-http, svn+ssh, svn+http, svn+https, svn+svn, svn+file).

I run this twice, first using Anaconda prompt, and then with Git CMD prompt, but it shows the same error in both cases.

Any other suggestion?

Thanks in advance,

[d-consoli]

Hi,

Sorry for the late reply, we have been working on a smoother way to install the library. First note, we are not working in the main branch since a long time, and in practice we only use develop. We wanted to merge develop to main but since we have a lot of C++ code to be compiled in develop we were waiting to have stable compilation solution. It looks like now we are converging and soon we will merge. In the meantime, you can try to install the library using the develop branch. Theoretically it should only have GDAL as dependency to pre-install. The rest will be picked with pip and CMake and compiled on the machine. We are not sure it will work for Windows machines, but on Linux there should be no problem. We tested on Colab and this works smoothly:
!pip install -e 'git+https://github.com/openlandmap/scikit-map.git@develop#egg=scikit-map[full]'

It is possible that in your case you have some conflicts with other conda environment, some times pip gets the wrong path, but also in a Ubuntu container with GDAL installed and some other python environments we had no issues. Let me know if this works for you.

[LabSR-UT]

Hi,

The installation process works fine in google colab notebook, but when I try to import it, throws this error:
ModuleNotFoundError: No module named 'skmap'

I try with skmap, scikit-map, scikit_map...How should I import it?

Thanks in advance

[d-consoli]

It should be imported as skmap, you can refer to this notebook to see the usage. We plan to clean up the installation process in the coming week to make everything smoother and reproducible, but in our current setup we rely on Docker containers where we have everything ready to go. For which application do you need the library? We can also provide you the container if needed/helpful.