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ENH: Port over
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news.rst

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News
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____
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New with version 2.5 (upcoming).
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--------------------------------
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Version 2.6 (unreleased)
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------------------------
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- Many structural bugs with the Python wrappers were fixed. They should be
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more stable and usable now.
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- Exceptions are now properly handled in OpenMP threads, which should improve
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stability.
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Version 2.5
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-----------
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Important re-write
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^^^^^^^^^^^^^^^^^^
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With the re-write of the internal code, a new block-matrix API has been added. This is useful
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for advanced leadfield computation (e.g. for varying conductivities leadfields without redoing
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all computations). It will be soon exploited to add some new capabilities to OpenMEEG.
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App improvments
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^^^^^^^^^^^^^^^
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- Add "-d" option to om_check_geom to check if dipoles are within
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the inner interface.
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Version 2.4
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-----------
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Enhancements
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^^^^^^^^^^^^
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- handles non-nested geometries: domains can have several neighbors as long as their
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conductivity is constant and isotropic.
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- handles zero-conductivity domains (modeling ventricles or silicone material)
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- CGAL meshing tools (allowing to remesh or decimate existing meshes,
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or to mesh a levelset)
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- can use linear algebra packages MKL and OpenBLAS, on all platforms (linux, MacOS and Windows)
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- support for VTK mesh formats
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Version 2.1
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^^^^^^^^^^^
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Enhancements
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^^^^^^^^^^^^
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- added the adjoint way for computing a leadfield for either EEG, MEG or
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MEEG simultaneously. This save a lot of time and memory for big systems (>1000 pts/surfaces).
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- better ordering in computations when inverting the matrix for the memory footprint.
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- storage now more effective using the matio library even for symmetric matrices.
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- support for matlab7.3 file format.
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- reducing memory footprint of DSM, Head2MEG, SurfSource2MEG and DipSource2MEG computations
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- improved MKL detection
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- lapack inclusion (experimental) to ease the build on architectures where
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there is no alternative.
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Bug fixes
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^^^^^^^^^
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- allowance of spaces in mesh file names with a new .geom format (old
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format is still accepted).
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- bug when loading sensor file with no empty line at the end
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- fix leak in Mesh class
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Removed features
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^^^^^^^^^^^^^^^^
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- TV inverse solver
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Version 1.1
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^^^^^^^^^^^
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Enhancements
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^^^^^^^^^^^^
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- added target for uninstalling (make uninstall).
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- possibility of evaluating the potential at any point within inner volume.
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- for Functional Electric Stimulation: added a new criterion to optimize: current activation.
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- support for MKL-10.0 on MacOS.
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- added the possibility of statically linked libraries for easier distribution (unix only).
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- more information on mesh qualify in om_mesh_info.
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- more tests (mostly for EIT tests).
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- do not use optimized operator D when using OpenMP.
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- automatic finding of fortan libraries (for unix), better blas/lapack/atlas detection.
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- build system updated for cmake 2.6
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Bug fixes
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^^^^^^^^^
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- corrected a misprint help message and adding a message if not enough arguments are given.
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- corrected the magnitude of MEG leadfields, update the tests accordingly.
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- added some missing guards against multiple .H inclusion.
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- correctly initialized matrices before filling them.
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- corrected handling of single layer models.
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- corrected the order of atlas libraries in link.
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Maintenance
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^^^^^^^^^^^
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- non-templated versions of the operatorsN,D,S ; the order of the parameters have been slightly changed .
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- use namespaces everywhere, prefix include guard variables by OPENMEEG_.
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- removed unnecessary info in file headers.
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- matlab io files.

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