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Hi dear Julia
there is a problem in docker that I solved with the following workaround
this is docker file that I pulled
openvax/neoantigen-vaccine-pipeline latest 96bd80f51521 14 months ago 5.52GB
docker run --entrypoint /bin/bash -it openvax/neoantigen-vaccine-pipeline:latest
docker run --entrypoint /bin/bash -it -v /home/ubuntu/0milad:/home/user/0milad openvax/neoantigen-vaccine-pipeline:latest
solving command "
pip uninstall polars gtfparse
pip install polars==0.12.5 gtfparse==1.2.1
pyensembl install --release 75 --species homo_sapiens
"
thanks and best wish
Milad
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