Open
Description
pyensembl install --release 109 --species homo_sapiens
2025-05-27 09:22:13,090 - pyensembl.shell - INFO - Running 'install' for EnsemblRelease(release=109, species='homo_sapiens')
2025-05-27 09:22:13,090 - pyensembl.database - INFO - Creating database: /scratch/multiomics/nickyoungblut/cache/pyensembl/GRCh38/ensembl109/Homo_sapiens.GRCh38.109.gtf.db
2025-05-27 09:22:13,090 - pyensembl.database - INFO - Reading GTF from /scratch/multiomics/nickyoungblut/cache/pyensembl/GRCh38/ensembl109/Homo_sapiens.GRCh38.109.gtf.gz
Traceback (most recent call last):
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/bin/pyensembl", line 10, in <module>
sys.exit(run())
^^^^^
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/pyensembl/shell.py", line 281, in run
genome.index(overwrite=args.overwrite)
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/pyensembl/genome.py", line 280, in index
self.db.connect_or_create(overwrite=overwrite)
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/pyensembl/database.py", line 286, in connect_or_create
return self.create(overwrite=overwrite)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/pyensembl/database.py", line 239, in create
self._connection = datacache.db_from_dataframes_with_absolute_path(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/datacache/database_helpers.py", line 176, in db_from_dataframes_with_absolute_path
tables = build_tables(
^^^^^^^^^^^^^
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/datacache/database_helpers.py", line 136, in build_tables
table = DatabaseTable.from_dataframe(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/datacache/database_table.py", line 56, in from_dataframe
column_db_type = db_type(values.dtype)
^^^^^^^^^^^^^^^^^^^^^
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/datacache/database_types.py", line 92, in db_type
for type_name in _candidate_type_names(python_type_representation):
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/datacache/database_types.py", line 64, in _candidate_type_names
if python_type_representation in np.typeDict:
^^^^^^^^^^^
File "/home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore/lib/python3.11/site-packages/numpy/__init__.py", line 414, in __getattr__
raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'typeDict'. Did you mean: 'sctypeDict'?
conda list
# packages in environment at /home/nickyoungblut/miniforge3/envs/sc-rna-seq-nanopore:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
alsa-lib 1.2.14 hb9d3cd8_0 conda-forge
anndata 0.11.4 pyhd8ed1ab_0 conda-forge
anyio 4.9.0 pyh29332c3_0 conda-forge
aom 3.9.1 hac33072_0 conda-forge
appdirs 1.4.4 pyhd8ed1ab_1 conda-forge
argon2-cffi 23.1.0 pyhd8ed1ab_1 conda-forge
argon2-cffi-bindings 21.2.0 py311h9ecbd09_5 conda-forge
arpack 3.9.1 nompi_hf03ea27_102 conda-forge
array-api-compat 1.12.0 pyhe01879c_0 conda-forge
arrow 1.3.0 pyhd8ed1ab_1 conda-forge
astroid 3.3.10 py311h38be061_0 conda-forge
asttokens 3.0.0 pyhd8ed1ab_1 conda-forge
async-lru 2.0.5 pyh29332c3_0 conda-forge
attrs 25.3.0 pyh71513ae_0 conda-forge
aws-c-auth 0.9.0 h3318fae_10 conda-forge
aws-c-cal 0.9.1 h5e3027f_0 conda-forge
aws-c-common 0.12.3 hb9d3cd8_0 conda-forge
aws-c-compression 0.3.1 hafb2847_5 conda-forge
aws-c-event-stream 0.5.4 haaa725d_10 conda-forge
aws-c-http 0.10.1 hd7992d4_3 conda-forge
aws-c-io 0.19.1 h93b6419_1 conda-forge
aws-c-mqtt 0.13.0 h7b3935a_4 conda-forge
aws-c-s3 0.8.0 h365f71b_1 conda-forge
aws-c-sdkutils 0.2.4 hafb2847_0 conda-forge
aws-checksums 0.2.7 hafb2847_1 conda-forge
aws-crt-cpp 0.32.6 h96107e3_3 conda-forge
aws-sdk-cpp 1.11.510 hf282fd2_9 conda-forge
azure-core-cpp 1.14.0 h5cfcd09_0 conda-forge
azure-identity-cpp 1.10.0 h113e628_0 conda-forge
azure-storage-blobs-cpp 12.13.0 h3cf044e_1 conda-forge
azure-storage-common-cpp 12.8.0 h736e048_1 conda-forge
azure-storage-files-datalake-cpp 12.12.0 ha633028_1 conda-forge
babel 2.17.0 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.13.4 pyha770c72_0 conda-forge
biopython 1.85 py311h9ecbd09_1 conda-forge
bleach 6.2.0 pyh29332c3_4 conda-forge
bleach-with-css 6.2.0 h82add2a_4 conda-forge
blosc 1.21.6 he440d0b_1 conda-forge
brotli 1.1.0 hb9d3cd8_2 conda-forge
brotli-bin 1.1.0 hb9d3cd8_2 conda-forge
brotli-python 1.1.0 py311hfdbb021_2 conda-forge
brunsli 0.1 h9c3ff4c_0 conda-forge
bzip2 1.0.8 h4bc722e_7 conda-forge
c-ares 1.34.5 hb9d3cd8_0 conda-forge
c-blosc2 2.17.1 h3122c55_0 conda-forge
ca-certificates 2025.4.26 hbd8a1cb_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.18.4 h3394656_0 conda-forge
certifi 2025.4.26 pyhd8ed1ab_0 conda-forge
cffi 1.17.1 py311hf29c0ef_0 conda-forge
charls 2.4.2 h59595ed_0 conda-forge
charset-normalizer 3.4.2 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_1 conda-forge
comm 0.2.2 pyhd8ed1ab_1 conda-forge
contourpy 1.3.2 py311hd18a35c_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_1 conda-forge
cyrus-sasl 2.1.27 h54b06d7_7 conda-forge
datacache 1.1.5 py_0 conda-forge
dav1d 1.2.1 hd590300_0 conda-forge
dbus 1.16.2 h3c4dab8_0 conda-forge
debugpy 1.8.14 py311hfdbb021_0 conda-forge
decorator 5.2.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dill 0.4.0 pyhd8ed1ab_0 conda-forge
double-conversion 3.3.1 h5888daf_0 conda-forge
exceptiongroup 1.3.0 pyhd8ed1ab_0 conda-forge
executing 2.2.0 pyhd8ed1ab_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_3 conda-forge
fontconfig 2.15.0 h7e30c49_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.58.0 py311h2dc5d0c_0 conda-forge
fqdn 1.5.1 pyhd8ed1ab_1 conda-forge
freetype 2.13.3 ha770c72_1 conda-forge
gflags 2.2.2 h5888daf_1005 conda-forge
giflib 5.2.2 hd590300_0 conda-forge
glog 0.7.1 hbabe93e_0 conda-forge
glpk 5.0 h445213a_0 conda-forge
gmp 6.3.0 hac33072_2 conda-forge
graphite2 1.3.13 h59595ed_1003 conda-forge
gtfparse 2.5.0 pyh7cba7a3_0 bioconda
h11 0.16.0 pyhd8ed1ab_0 conda-forge
h2 4.2.0 pyhd8ed1ab_0 conda-forge
h5py 3.13.0 nompi_py311h38436b4_101 conda-forge
harfbuzz 11.2.1 h3beb420_0 conda-forge
harmonypy 0.0.10 pypi_0 pypi
hdf5 1.14.6 nompi_h2d575fe_101 conda-forge
hpack 4.1.0 pyhd8ed1ab_0 conda-forge
httpcore 1.0.9 pyh29332c3_0 conda-forge
httpx 0.28.1 pyhd8ed1ab_0 conda-forge
hyperframe 6.1.0 pyhd8ed1ab_0 conda-forge
icu 75.1 he02047a_0 conda-forge
idna 3.10 pyhd8ed1ab_1 conda-forge
igraph 0.10.15 he44f51b_1 conda-forge
imagecodecs 2024.12.30 py311he223c61_1 conda-forge
imageio 2.37.0 pyhfb79c49_0 conda-forge
importlib-metadata 8.7.0 pyhe01879c_1 conda-forge
importlib_resources 6.5.2 pyhd8ed1ab_0 conda-forge
iprogress 0.4 py_0 conda-forge
ipykernel 6.29.5 pyh3099207_0 conda-forge
ipython 9.2.0 pyhfb0248b_0 conda-forge
ipython_pygments_lexers 1.1.1 pyhd8ed1ab_0 conda-forge
ipywidgets 8.1.7 pyhd8ed1ab_0 conda-forge
isoduration 20.11.0 pyhd8ed1ab_1 conda-forge
isort 6.0.1 pyhd8ed1ab_1 conda-forge
jedi 0.19.2 pyhd8ed1ab_1 conda-forge
jinja2 3.1.6 pyhd8ed1ab_0 conda-forge
joblib 1.5.1 pyhd8ed1ab_0 conda-forge
json5 0.12.0 pyhd8ed1ab_0 conda-forge
jsonpointer 3.0.0 py311h38be061_1 conda-forge
jsonschema 4.24.0 pyhd8ed1ab_0 conda-forge
jsonschema-specifications 2025.4.1 pyh29332c3_0 conda-forge
jsonschema-with-format-nongpl 4.24.0 hd8ed1ab_0 conda-forge
jupyter 1.1.1 pyhd8ed1ab_1 conda-forge
jupyter-lsp 2.2.5 pyhd8ed1ab_1 conda-forge
jupyter_client 8.6.3 pyhd8ed1ab_1 conda-forge
jupyter_console 6.6.3 pyhd8ed1ab_1 conda-forge
jupyter_core 5.8.1 pyh31011fe_0 conda-forge
jupyter_events 0.12.0 pyh29332c3_0 conda-forge
jupyter_server 2.16.0 pyhe01879c_0 conda-forge
jupyter_server_terminals 0.5.3 pyhd8ed1ab_1 conda-forge
jupyterlab 4.4.3 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.3.0 pyhd8ed1ab_2 conda-forge
jupyterlab_server 2.27.3 pyhd8ed1ab_1 conda-forge
jupyterlab_widgets 3.0.15 pyhd8ed1ab_0 conda-forge
jxrlib 1.1 hd590300_3 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.7 py311hd18a35c_0 conda-forge
krb5 1.21.3 h659f571_0 conda-forge
lazy-loader 0.4 pyhd8ed1ab_2 conda-forge
lcms2 2.17 h717163a_0 conda-forge
ld_impl_linux-64 2.43 h712a8e2_4 conda-forge
legacy-api-wrap 1.4.1 pyhd8ed1ab_0 conda-forge
leidenalg 0.10.2 py311hb755f60_0 conda-forge
lerc 4.0.0 h0aef613_1 conda-forge
libabseil 20250127.1 cxx17_hbbce691_0 conda-forge
libaec 1.1.3 h59595ed_0 conda-forge
libarrow 20.0.0 h9b1bdb9_4_cpu conda-forge
libarrow-acero 20.0.0 hcb10f89_4_cpu conda-forge
libarrow-dataset 20.0.0 hcb10f89_4_cpu conda-forge
libarrow-substrait 20.0.0 h1bed206_4_cpu conda-forge
libavif16 1.3.0 h766b0b6_0 conda-forge
libblas 3.9.0 31_h59b9bed_openblas conda-forge
libbrotlicommon 1.1.0 hb9d3cd8_2 conda-forge
libbrotlidec 1.1.0 hb9d3cd8_2 conda-forge
libbrotlienc 1.1.0 hb9d3cd8_2 conda-forge
libcblas 3.9.0 31_he106b2a_openblas conda-forge
libclang-cpp20.1 20.1.5 default_h1df26ce_1 conda-forge
libclang13 20.1.5 default_he06ed0a_1 conda-forge
libcrc32c 1.1.2 h9c3ff4c_0 conda-forge
libcups 2.3.3 h4637d8d_4 conda-forge
libcurl 8.13.0 h332b0f4_0 conda-forge
libdeflate 1.24 h86f0d12_0 conda-forge
libdrm 2.4.124 hb9d3cd8_0 conda-forge
libedit 3.1.20250104 pl5321h7949ede_0 conda-forge
libegl 1.7.0 ha4b6fd6_2 conda-forge
libev 4.33 hd590300_2 conda-forge
libevent 2.1.12 hf998b51_1 conda-forge
libexpat 2.7.0 h5888daf_0 conda-forge
libffi 3.4.6 h2dba641_1 conda-forge
libfreetype 2.13.3 ha770c72_1 conda-forge
libfreetype6 2.13.3 h48d6fc4_1 conda-forge
libgcc 15.1.0 h767d61c_2 conda-forge
libgcc-ng 15.1.0 h69a702a_2 conda-forge
libgfortran 15.1.0 h69a702a_2 conda-forge
libgfortran5 15.1.0 hcea5267_2 conda-forge
libgl 1.7.0 ha4b6fd6_2 conda-forge
libglib 2.84.2 h3618099_0 conda-forge
libglvnd 1.7.0 ha4b6fd6_2 conda-forge
libglx 1.7.0 ha4b6fd6_2 conda-forge
libgomp 15.1.0 h767d61c_2 conda-forge
libgoogle-cloud 2.36.0 hc4361e1_1 conda-forge
libgoogle-cloud-storage 2.36.0 h0121fbd_1 conda-forge
libgrpc 1.71.0 h8e591d7_1 conda-forge
libhwloc 2.11.2 default_h0d58e46_1001 conda-forge
libhwy 1.2.0 hf40a0c7_0 conda-forge
libiconv 1.18 h4ce23a2_1 conda-forge
libjpeg-turbo 3.1.0 hb9d3cd8_0 conda-forge
libjxl 0.11.1 h7b0646d_1 conda-forge
liblapack 3.9.0 31_h7ac8fdf_openblas conda-forge
libleidenalg 0.11.1 h00ab1b0_0 conda-forge
libllvm20 20.1.5 he9d0ab4_0 conda-forge
liblzma 5.8.1 hb9d3cd8_1 conda-forge
libnghttp2 1.64.0 h161d5f1_0 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libntlm 1.8 hb9d3cd8_0 conda-forge
libopenblas 0.3.29 pthreads_h94d23a6_0 conda-forge
libopengl 1.7.0 ha4b6fd6_2 conda-forge
libopentelemetry-cpp 1.20.0 hd1b1c89_0 conda-forge
libopentelemetry-cpp-headers 1.20.0 ha770c72_0 conda-forge
libparquet 20.0.0 h081d1f1_4_cpu conda-forge
libpciaccess 0.18 hd590300_0 conda-forge
libpng 1.6.47 h943b412_0 conda-forge
libpq 17.5 h27ae623_0 conda-forge
libprotobuf 5.29.3 h501fc15_1 conda-forge
libre2-11 2024.07.02 hba17884_3 conda-forge
libsodium 1.0.20 h4ab18f5_0 conda-forge
libsqlite 3.49.2 hee588c1_0 conda-forge
libssh2 1.11.1 hcf80075_0 conda-forge
libstdcxx 15.1.0 h8f9b012_2 conda-forge
libstdcxx-ng 15.1.0 h4852527_2 conda-forge
libthrift 0.21.0 h0e7cc3e_0 conda-forge
libtiff 4.7.0 hf01ce69_5 conda-forge
libutf8proc 2.10.0 h202a827_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libwebp-base 1.5.0 h851e524_0 conda-forge
libxcb 1.17.0 h8a09558_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libxkbcommon 1.10.0 h65c71a3_0 conda-forge
libxml2 2.13.8 h4bc477f_0 conda-forge
libxslt 1.1.39 h76b75d6_0 conda-forge
libzlib 1.3.1 hb9d3cd8_2 conda-forge
libzopfli 1.0.3 h9c3ff4c_0 conda-forge
llvmlite 0.44.0 py311h9c9ff8c_1 conda-forge
lz4-c 1.10.0 h5888daf_1 conda-forge
markupsafe 3.0.2 py311h2dc5d0c_1 conda-forge
matplotlib 3.10.3 py311h38be061_0 conda-forge
matplotlib-base 3.10.3 py311h2b939e6_0 conda-forge
matplotlib-inline 0.1.7 pyhd8ed1ab_1 conda-forge
mccabe 0.7.0 pyhd8ed1ab_1 conda-forge
memoized-property 1.0.3 pyhd8ed1ab_1 conda-forge
mistune 3.1.3 pyh29332c3_0 conda-forge
mizani 0.13.5 pyhd8ed1ab_0 conda-forge
mock 5.2.0 pyhd8ed1ab_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
natsort 8.4.0 pyh29332c3_1 conda-forge
nbclient 0.10.2 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.16.6 pyh29332c3_0 conda-forge
nbformat 5.10.4 pyhd8ed1ab_1 conda-forge
ncurses 6.5 h2d0b736_3 conda-forge
nest-asyncio 1.6.0 pyhd8ed1ab_1 conda-forge
networkx 3.4.2 pyh267e887_2 conda-forge
nlohmann_json 3.12.0 h3f2d84a_0 conda-forge
notebook 7.4.3 pyhd8ed1ab_0 conda-forge
notebook-shim 0.2.4 pyhd8ed1ab_1 conda-forge
numba 0.61.2 py311h4e1c48f_0 conda-forge
numpy 2.2.6 py311h5d046bc_0 conda-forge
openjpeg 2.5.3 h5fbd93e_0 conda-forge
openldap 2.6.10 he970967_0 conda-forge
openssl 3.5.0 h7b32b05_1 conda-forge
orc 2.1.2 h17f744e_0 conda-forge
overrides 7.7.0 pyhd8ed1ab_1 conda-forge
packaging 25.0 pyh29332c3_1 conda-forge
pandas 2.2.3 py311h7db5c69_3 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.4 pyhd8ed1ab_1 conda-forge
patsy 1.0.1 pyhd8ed1ab_1 conda-forge
pcre2 10.45 hc749103_0 conda-forge
pexpect 4.9.0 pyhd8ed1ab_1 conda-forge
pickleshare 0.7.5 pyhd8ed1ab_1004 conda-forge
pillow 11.2.1 py311h1322bbf_0 conda-forge
pip 25.1.1 pyh8b19718_0 conda-forge
pixman 0.46.0 h29eaf8c_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_2 conda-forge
platformdirs 4.3.8 pyhe01879c_0 conda-forge
plotnine 0.14.5 pyhd8ed1ab_0 conda-forge
polars 0.20.31 py311h79f0488_1 conda-forge
progressbar33 2.4 pyhd8ed1ab_1 conda-forge
prometheus-cpp 1.3.0 ha5d0236_0 conda-forge
prometheus_client 0.22.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.51 pyha770c72_0 conda-forge
prompt_toolkit 3.0.51 hd8ed1ab_0 conda-forge
psutil 7.0.0 py311h9ecbd09_0 conda-forge
pthread-stubs 0.4 hb9d3cd8_1002 conda-forge
ptyprocess 0.7.0 pyhd8ed1ab_1 conda-forge
pure_eval 0.2.3 pyhd8ed1ab_1 conda-forge
pyarrow 20.0.0 py311h38be061_0 conda-forge
pyarrow-core 20.0.0 py311h4854187_0_cpu conda-forge
pycparser 2.22 pyh29332c3_1 conda-forge
pyensembl 2.3.13 pyh7cba7a3_0 bioconda
pygments 2.19.1 pyhd8ed1ab_0 conda-forge
pylint 3.3.7 pyhe01879c_0 conda-forge
pynndescent 0.5.13 pyhd8ed1ab_1 conda-forge
pyparsing 3.2.3 pyhd8ed1ab_1 conda-forge
pyside6 6.9.0 py311h9053184_0 conda-forge
pysocks 1.7.1 pyha55dd90_7 conda-forge
python 3.11.12 h9e4cc4f_0_cpython conda-forge
python-annoy 1.17.3 py311hfdbb021_2 conda-forge
python-dateutil 2.9.0.post0 pyhff2d567_1 conda-forge
python-fastjsonschema 2.21.1 pyhd8ed1ab_0 conda-forge
python-igraph 0.11.8 py311h9806173_0 conda-forge
python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge
python-tzdata 2025.2 pyhd8ed1ab_0 conda-forge
python_abi 3.11 7_cp311 conda-forge
pytz 2025.2 pyhd8ed1ab_0 conda-forge
pywavelets 1.8.0 py311h9f3472d_0 conda-forge
pyyaml 6.0.2 py311h2dc5d0c_2 conda-forge
pyzmq 26.4.0 py311h7deb3e3_0 conda-forge
qhull 2020.2 h434a139_5 conda-forge
qt6-main 6.9.0 h0384650_3 conda-forge
rav1e 0.7.1 h8fae777_3 conda-forge
re2 2024.07.02 h9925aae_3 conda-forge
readline 8.2 h8c095d6_2 conda-forge
referencing 0.36.2 pyh29332c3_0 conda-forge
requests 2.32.3 pyhd8ed1ab_1 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_1 conda-forge
rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge
rpds-py 0.25.1 py311hdae7d1d_0 conda-forge
s2n 1.5.19 h763c568_0 conda-forge
scanpy 1.11.1 pyhd8ed1ab_0 conda-forge
scikit-image 0.25.2 py311h7db5c69_1 conda-forge
scikit-learn 1.5.2 py311h57cc02b_1 conda-forge
scipy 1.15.2 py311h8f841c2_0 conda-forge
seaborn 0.13.2 hd8ed1ab_3 conda-forge
seaborn-base 0.13.2 pyhd8ed1ab_3 conda-forge
send2trash 1.8.3 pyh0d859eb_1 conda-forge
serializable 0.2.1 pyhd8ed1ab_0 conda-forge
session-info2 0.1.2 pyhd8ed1ab_0 conda-forge
setuptools 80.8.0 pyhff2d567_0 conda-forge
simplejson 3.20.1 py311h9ecbd09_0 conda-forge
six 1.17.0 pyhd8ed1ab_0 conda-forge
snappy 1.2.1 h8bd8927_1 conda-forge
sniffio 1.3.1 pyhd8ed1ab_1 conda-forge
soupsieve 2.7 pyhd8ed1ab_0 conda-forge
stack_data 0.6.3 pyhd8ed1ab_1 conda-forge
statsmodels 0.14.4 py311h9f3472d_0 conda-forge
svt-av1 3.0.2 h5888daf_0 conda-forge
tbb 2022.1.0 h4ce085d_0 conda-forge
terminado 0.18.1 pyh0d859eb_0 conda-forge
texttable 1.7.0 pyhd8ed1ab_1 conda-forge
threadpoolctl 3.6.0 pyhecae5ae_0 conda-forge
tifffile 2025.5.26 pyhd8ed1ab_0 conda-forge
tinycss2 1.4.0 pyhd8ed1ab_0 conda-forge
tinytimer 0.0.0 py_0 conda-forge
tk 8.6.13 noxft_h4845f30_101 conda-forge
tomli 2.2.1 pyhd8ed1ab_1 conda-forge
tomlkit 0.13.2 pyha770c72_1 conda-forge
tornado 6.5.1 py311h9ecbd09_0 conda-forge
tqdm 4.67.1 pyhd8ed1ab_1 conda-forge
traitlets 5.14.3 pyhd8ed1ab_1 conda-forge
typechecks 0.1.0 pyhd8ed1ab_1 conda-forge
types-python-dateutil 2.9.0.20250516 pyhd8ed1ab_0 conda-forge
typing-extensions 4.13.2 h0e9735f_0 conda-forge
typing_extensions 4.13.2 pyh29332c3_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_1 conda-forge
tzdata 2025b h78e105d_0 conda-forge
umap-learn 0.5.7 py311h38be061_1 conda-forge
unicodedata2 16.0.0 py311h9ecbd09_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_1 conda-forge
urllib3 2.4.0 pyhd8ed1ab_0 conda-forge
wayland 1.23.1 h3e06ad9_1 conda-forge
wcwidth 0.2.13 pyhd8ed1ab_1 conda-forge
webcolors 24.11.1 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_3 conda-forge
websocket-client 1.8.0 pyhd8ed1ab_1 conda-forge
wheel 0.45.1 pyhd8ed1ab_1 conda-forge
widgetsnbextension 4.0.14 pyhd8ed1ab_0 conda-forge
xcb-util 0.4.1 hb711507_2 conda-forge
xcb-util-cursor 0.1.5 hb9d3cd8_0 conda-forge
xcb-util-image 0.4.0 hb711507_2 conda-forge
xcb-util-keysyms 0.4.1 hb711507_0 conda-forge
xcb-util-renderutil 0.3.10 hb711507_0 conda-forge
xcb-util-wm 0.4.2 hb711507_0 conda-forge
xkeyboard-config 2.44 hb9d3cd8_0 conda-forge
xorg-libice 1.1.2 hb9d3cd8_0 conda-forge
xorg-libsm 1.2.6 he73a12e_0 conda-forge
xorg-libx11 1.8.12 h4f16b4b_0 conda-forge
xorg-libxau 1.0.12 hb9d3cd8_0 conda-forge
xorg-libxcomposite 0.4.6 hb9d3cd8_2 conda-forge
xorg-libxcursor 1.2.3 hb9d3cd8_0 conda-forge
xorg-libxdamage 1.1.6 hb9d3cd8_0 conda-forge
xorg-libxdmcp 1.1.5 hb9d3cd8_0 conda-forge
xorg-libxext 1.3.6 hb9d3cd8_0 conda-forge
xorg-libxfixes 6.0.1 hb9d3cd8_0 conda-forge
xorg-libxi 1.8.2 hb9d3cd8_0 conda-forge
xorg-libxrandr 1.5.4 hb9d3cd8_0 conda-forge
xorg-libxrender 0.9.12 hb9d3cd8_0 conda-forge
xorg-libxtst 1.2.5 hb9d3cd8_3 conda-forge
xorg-libxxf86vm 1.1.6 hb9d3cd8_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
zeromq 4.3.5 h3b0a872_7 conda-forge
zfp 1.0.1 h5888daf_2 conda-forge
zipp 3.22.0 pyhd8ed1ab_0 conda-forge
zlib 1.3.1 hb9d3cd8_2 conda-forge
zlib-ng 2.2.4 h7955e40_0 conda-forge
zstandard 0.23.0 py311h9ecbd09_2 conda-forge
zstd 1.5.7 hb8e6e7a_2 conda-forge
@iskandr do you accept PRs? I see that this repo could use some updating (e.g., still using setup.py
instead of pyproject.toml
).
Metadata
Metadata
Assignees
Labels
No labels