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changed 2018 tests
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‎.test.2018.mep

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -3,4 +3,4 @@ system: Testing activity of some neurons
33
experiments:
44
Test:
55
expected:
6-
spike times: [1.97, 24.49, 49.05]
6+
spike times: [0.17, 8.57, 18.73, 29.09, 39.49, 49.85]

‎.test.2018.omt

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Original file line numberDiff line numberDiff line change
@@ -14,5 +14,5 @@ experiments:
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scaling: [1, 1]
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spike detection:
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method: threshold
17-
threshold: 10
17+
threshold: 1
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tolerance: 0

‎.test.2018W2D.omt

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -14,5 +14,5 @@ experiments:
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scaling: [1, 1]
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spike detection:
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method: threshold
17-
threshold: 10
17+
threshold: 1
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tolerance: 0

‎exampleRun21W2D/behavior.pdf

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‎exampleRun21W2D_nml/behavior.pdf

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‎exampleRunCEW2D/behavior.pdf

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‎exampleRunCEW2D_nml/behavior.pdf

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‎exampleRunRS18/ExampleActivity.png

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‎exampleRunRS18/act.dat

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‎exampleRunRS18/best.gen.dat

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@@ -1 +1 @@
1-
-0.021533133378171174371340512720963 0.11751496039637869539529191342808 -0.75903238626652280718332121978165 0.0081680256516945826117392925880267 0.11418971180854710356644687863081 -0.66261287082164355144442424716544 -0.72523408486630458469335280824453 0.23753205965120557929814992803585 0.62593311763075176745729777394445 -0.88817497291400349102019617930637 -0.52249279307192597610054463075357 0.61382921796921607882069338302244 -0.33032702634543426034596791396325 -0.2979241224738596871546292277344 0.69784909933787042657371557652368 -0.55518298112102026919956188066863 0.010204556967420976704152835168316 -0.1310987043390253459218541820519 -0.30612009209788376695726697107602 0.051408441843512425739604054797383 -0.33995631739433468387900916241051 -0.26027205841401224173381478976808 -0.66388647730879069008835813292535 0.77098616951189735679861314565642 -0.39948610331810485707393354459782 -1 -0.94619072581260965648652927484363 0.045710305154919354808651377197748 0.11767343587577351604611664015465 0.36084012081458360921004668853129
1+
0.43269233451462391082387171081791 -0.45642046061859686822970161301782 -0.046950108472016867378062698890062 -0.99811394736377345715538922377164 -0.59847253467187178088693144673016 -0.18395243953472600884069265703147 -0.36431233499685922172517393846647 0.57917047445937019922723720810609 -1 0.41216661185698449942904630916019 -0.85745652265574956452098831505282 0.14747441725846038851344133036037 -0.37161654688075673735880855019786 -0.42973762201346549227665150283428 0.31979052005929031743391988129588 0.25639373310158947161241371759388 0.80083969458655857032169933518162 -0.22668198822571028472339094150811 -0.054996627835834220598965060844421 0.1715489428240950797732722321598 -0.46257284727807523871945249993587 -0.33731076152769157161515067855362 -0.88953713532506661909593503878568 0.88241084744737463552155531942844 -0.8607963371262977725351106528251 -0.75807250314424179382655211156816 0.0036756801624733981964654461194186 0.64289132742736310177633640705608 0.34659635519940779069258951494703 0.88513869111361631603074329177616

‎exampleRunRS18/body.dat

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‎exampleRunRS18/curv.dat

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‎exampleRunRS18/evolution_pars.json

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Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
{
22
"Duration": 50,
33
"PopulationSize": 36,
4-
"randomseed": 323404,
5-
"MaxGenerations": 30
4+
"randomseed": 292,
5+
"MaxGenerations": 36
66
}

‎exampleRunRS18/fitness.dat

Lines changed: 37 additions & 31 deletions
Original file line numberDiff line numberDiff line change
@@ -1,31 +1,37 @@
1-
0 0.00241330207 0.0002627863227 4.401727378e-07
2-
1 0.02649317059 0.001465113665 2.163870333e-05
3-
2 0.0256014751 0.003430169779 5.016253425e-05
4-
3 0.03304945993 0.005775029427 0.0001112764126
5-
4 0.02958473942 0.005370083275 8.042117611e-05
6-
5 0.02990651574 0.005648318008 8.69606934e-05
7-
6 0.03277475739 0.006755223767 0.0001129879664
8-
7 0.03306287081 0.004949914071 9.57528791e-05
9-
8 0.03258967868 0.003349235187 4.65239303e-05
10-
9 0.03340882037 0.005218148472 8.509375827e-05
11-
10 0.03325529402 0.00673028044 9.339714624e-05
12-
11 0.03687319671 0.01044829344 0.0001577735606
13-
12 0.03664496334 0.007317399799 9.219965588e-05
14-
13 0.03685359107 0.00914254013 0.0001035936672
15-
14 0.02675718309 0.006235979499 5.332311614e-05
16-
15 0.02674180203 0.006483572982 7.370570462e-05
17-
16 0.027116229 0.005131333771 5.208686192e-05
18-
17 0.02682044244 0.006687636118 7.864187322e-05
19-
18 0.02643676169 0.003609409512 4.396239758e-05
20-
19 0.02524488033 0.003308434362 3.226609866e-05
21-
20 0.02597179048 0.004177760729 3.223710485e-05
22-
21 0.02633870051 0.004659734461 5.452345387e-05
23-
22 0.02688080149 0.0053532393 6.595997306e-05
24-
23 0.02937145398 0.006188838784 8.35522942e-05
25-
24 0.07832337785 0.009238900685 0.0002296614194
26-
25 0.07845027648 0.006133256779 0.0001958117772
27-
26 0.08106339089 0.01111467557 0.0004211343775
28-
27 0.1820581463 0.01037349025 0.001035840205
29-
28 0.1840577024 0.01409067519 0.001018771411
30-
29 0.1924244593 0.01885000692 0.001831610939
31-
30 0.2021831613 0.02397974063 0.002826651368
1+
0 0.00961318632 0.0004174873616 3.256738581e-06
2+
1 0.009421547939 0.0004538448356 3.550237222e-06
3+
2 0.009200756688 0.000618267429 4.53344528e-06
4+
3 0.009485960053 0.0003109890523 2.49882897e-06
5+
4 0.0313851139 0.001128761571 2.924452243e-05
6+
5 0.03137871287 0.001292707757 2.95879275e-05
7+
6 0.03226844455 0.002190004164 5.567133404e-05
8+
7 0.03226102473 0.001785590238 4.632078426e-05
9+
8 0.03418695663 0.003653571185 9.459078942e-05
10+
9 0.03298783586 0.00179751125 5.120931002e-05
11+
10 0.03427511511 0.002183589921 6.083905906e-05
12+
11 0.03375614404 0.002130651631 6.135602892e-05
13+
12 0.03439399231 0.002743399169 6.252098755e-05
14+
13 0.03434059598 0.003073996356 8.862485392e-05
15+
14 0.03523461798 0.002382435964 6.503612222e-05
16+
15 0.03525596424 0.002770463761 6.59905978e-05
17+
16 0.03526960875 0.00293218473 5.645298433e-05
18+
17 0.03524628322 0.005524178353 0.0001259251221
19+
18 0.03501378847 0.00438937307 0.0001028616669
20+
19 0.03497366039 0.003548936551 7.482291873e-05
21+
20 0.03507056598 0.006180737099 0.0001377944231
22+
21 0.03516048956 0.006445861154 0.000126663864
23+
22 0.03512055836 0.006036986031 0.0001372535248
24+
23 0.06322995417 0.009258619688 0.0002344367241
25+
24 0.05985759319 0.008694954208 0.0002051828399
26+
25 0.06293373471 0.007950818817 0.0001981592912
27+
26 0.06301404917 0.009237504503 0.0002431296186
28+
27 0.1092973949 0.01317108671 0.0006523068909
29+
28 0.1092941169 0.01303362434 0.0007238508843
30+
29 0.1087563364 0.01510592598 0.0007640702059
31+
30 0.2301777978 0.02168701864 0.002192688445
32+
31 0.2557637322 0.02560330936 0.00336067697
33+
32 0.2557681669 0.02842086634 0.004575183497
34+
33 0.2592793887 0.03229308934 0.004669214739
35+
34 0.2592869439 0.03073817755 0.004535194152
36+
35 0.2971145002 0.03223900089 0.005292845298
37+
36 0.2977594882 0.03154153316 0.003754714836

‎exampleRunRS18/params.dat

Lines changed: 42 additions & 42 deletions
Original file line numberDiff line numberDiff line change
@@ -1,63 +1,63 @@
11
Time-constants:
2-
DB: 0.680726
3-
VBA/P: 0.680726 / 0.680726
4-
DD: 1.25613
5-
VDA/P: 1.25613 / 1.25613
2+
DB: 1.21479
3+
VBA/P: 1.21479 / 1.21479
4+
DD: 0.501415
5+
VDA/P: 0.501415 / 0.501415
66
Biases:
7-
DB: -0.322997
8-
VBA/P: -0.322997 / -0.322997
9-
DD: 1.76272
10-
VDA/P: 1.76272 / 1.76272
7+
DB: 6.49039
8+
VBA/P: 6.49039 / 6.49039
9+
DD: -6.84631
10+
VDA/P: -6.84631 / -6.84631
1111
Self conns:
12-
DB: 1.71285
13-
VBA/P: 1.71285 / 1.71285
14-
DD: -9.93919
15-
VDA/P: -9.93919 / -9.93919
12+
DB: -8.97709
13+
VBA/P: -8.97709 / -8.97709
14+
DD: -2.75929
15+
VDA/P: -2.75929 / -2.75929
1616
Chem Conns:
17-
DB->DD: -10.8785
18-
DB->VDA/VDP: 3.56298 / 3.56298
19-
VBA/P->DD: 1.78149 / 1.78149
20-
VBA/P->VDA/P: -10.8785 / -10.8785
17+
DB->DD: -5.46469
18+
DB->VDA/VDP: 8.68756 / 8.68756
19+
VBA/P->DD: 4.34378 / 4.34378
20+
VBA/P->VDA/P: -5.46469 / -5.46469
2121
VDA/P->VBA/P: 0 / 0
22-
DD->VDA: 9.389
22+
DD->VDA: -15
2323
Gap Juncs:
24-
DB-DB+1: 1.61383
25-
VBA-VBP / VBP-VBP+1: 1.61383 / 1.61383
26-
VBP-DB+1: 0.669673
27-
DD-VDA/P: 0.111825 / 0.111825
28-
DD-DD+1: 0.477507
29-
VDA-VDP / VDP-VDP+1: 0.477507 / 0.477507
30-
SR Gain (VNC and Head): -129.792 -95.429
24+
DB-DB+1: 1.14747
25+
VBA-VBP / VBP-VBP+1: 1.14747 / 1.14747
26+
VBP-DB+1: 0.628383
27+
DD-VDA/P: 1.41217 / 1.41217
28+
DD-DD+1: 0.142543
29+
VDA-VDP / VDP-VDP+1: 0.142543 / 0.142543
30+
SR Gain (VNC and Head): -142.974 -35.7109
3131
NMJ weights:
32-
B: 0.848925 0.848925 0.848925
33-
D: -0.777591 -0.777591 -0.777591
32+
B: 0.659895 0.659895 0.659895
33+
D: -0.371803 -0.371803 -0.371803
3434
Head:
3535
Biases:
36-
SMD(D/V): 0.153068 0.153068
37-
RMD(D/V): -1.96648 -1.96648
36+
SMD(D/V): 12.0126 12.0126
37+
RMD(D/V): -3.40023 -3.40023
3838
Time-constants:
39-
SMD(D/V): 1.02041 1.02041
40-
RMD(D/V): 1.28856 1.28856
39+
SMD(D/V): 1.20875 1.20875
40+
RMD(D/V): 1.37866 1.37866
4141
Self conns:
42-
SMD(D/V): -5.09934 -5.09934
43-
RMD(D/V): 8.0685 8.0685
42+
SMD(D/V): -6.93859 -6.93859
43+
RMD(D/V): 7.64479 7.64479
4444
Chem conns:
4545
SMDD->RMDD: 0
46-
SMDD->SMDV: -9.9583
47-
SMDD->RMDV: 11.5648
46+
SMDD->SMDV: -13.3431
47+
SMDD->RMDV: 13.2362
4848
RMDD->SMDD: 0
4949
RMDD->SMDV: 0
50-
RMDD->RMDV: -5.99229
51-
SMDV->SMDD: -9.9583
52-
SMDV->RMDD: 11.5648
50+
RMDD->RMDV: -12.9119
51+
SMDV->SMDD: -13.3431
52+
SMDV->RMDD: 13.2362
5353
SMDV->RMDV: 0
5454
RMDV->SMDD: 0
55-
RMDV->RMDD: -5.99229
55+
RMDV->RMDD: -12.9119
5656
RMDV->SMDV: 0
5757
Gap Juncs:
58-
SMD-RMD: 0
59-
RMD-RMD: 0.0538093
58+
SMD-RMD: 0.241927
59+
RMD-RMD: 1.00368
6060
NMJ weights:
61-
SMD(D/V): 0.558837 0.558837
62-
RMD(D/V): 0.68042 0.68042
61+
SMD(D/V): 0.673298 0.673298
62+
RMD(D/V): 0.942569 0.942569
6363
NMJ Gain: 0.5

‎exampleRunRS18/seed.dat

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323404
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292

‎exampleRunRS18/simulation_pars.json

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{
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"doNML": 0,
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"seed": 323404,
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"seed": 292,
44
"Duration": 50,
55
"doRandInit": 0
66
}

‎exampleRunRS18/speed.dat

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0.194548 0.011 0.00214002 4.28005e-05
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0.299214 0.011 0.00329136 6.58271e-05

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