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I tried installing pdftools using default mirror in GraalVM + FastR 20.3.0. Trying to install on macOS Catalina 10.15.7.
Error installing pdftools:
> install.package('pdftools')
* installing *source* package ‘pdftools’ ...
** package ‘pdftools’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/local/Cellar/poppler/0.74.0/include/poppler/cpp -I/usr/local/Cellar/poppler/0.74.0/include/poppler
Using PKG_LIBS=-L/usr/local/Cellar/poppler/0.74.0/lib -lpoppler-cpp
** libs
".../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/bin/safe-forward-g++" -std=gnu++11 -I".../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/include" -DNDEBUG -I/usr/local/Cellar/poppler/0.74.0/include/poppler/cpp -I/usr/local/Cellar/poppler/0.74.0/include/poppler -I".../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib/Rcpp/include" -O2 -DFASTR -DNO_GNUR -fvisibility=hidden -fPIC -O2 -DFASTR -DNO_GNUR -c RcppExports.cpp -o RcppExports.o
".../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/bin/safe-forward-g++" -std=gnu++11 -I".../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/include" -DNDEBUG -I/usr/local/Cellar/poppler/0.74.0/include/poppler/cpp -I/usr/local/Cellar/poppler/0.74.0/include/poppler -I".../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib/Rcpp/include" -O2 -DFASTR -DNO_GNUR -fvisibility=hidden -fPIC -O2 -DFASTR -DNO_GNUR -c bindings.cpp -o bindings.o
.../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/bin/safe-forward-g++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names,-rpath,.../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib/,-undefined,dynamic_lookup -L.../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib -undefined dynamic_lookup -single_module -multiply_defined suppress -Wl,-rpath,.../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib/,-undefined,dynamic_lookup -L.../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib -o pdftools.so RcppExports.o bindings.o -L/usr/local/Cellar/poppler/0.74.0/lib -lpoppler-cpp
installing to .../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib/00LOCK-pdftools/00new/pdftools/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘pdftools’ in runHook(".onLoad", env, package.lib, package):
.onLoad failed in loadNamespace() for 'pdftools', details:
call: .Call("_pdftools_set_error_callback", PACKAGE = "pdftools")
error: "_pdftools_set_error_callback" not available for .Call() for package "pdftools"
Error: loading failed
> bin/R --vm.version
openjdk version "11.0.9" 2020-10-20
OpenJDK Runtime Environment GraalVM CE 20.3.0 (build 11.0.9+10-jvmci-20.3-b06)
OpenJDK 64-Bit Server VM GraalVM CE 20.3.0 (build 11.0.9+10-jvmci-20.3-b06, mixed mode, sharing)
Output of R built-in function sessionInfo().
> sessionInfo()
FastR version 3.6.1 (2019-07-05)
Platform: x86_64-apple-darwin19.6.0 (64-bit)
Running under: macOS Catalina 10.15.7
Matrix products: default
BLAS: .../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib/libRblas.dylib
LAPACK: .../GraalVMWithFastR/20.3.0/graalvm-ce-java11-20.3.0/Contents/Home/languages/R/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.6.1
Do you have anymore suggestions on what I can do? Or is this a bug? I successfully installed GraalVM+FastR 20.3.0 and this package on an Ubuntu 20.04 docker container, so I am quite puzzled right now why it fails in macOS.
The text was updated successfully, but these errors were encountered:
I tried installing
pdftools
using default mirror in GraalVM + FastR 20.3.0. Trying to install onmacOS Catalina 10.15.7
.Error installing
pdftools
:Output of R built-in function
sessionInfo()
.Do you have anymore suggestions on what I can do? Or is this a bug? I successfully installed GraalVM+FastR 20.3.0 and this package on an Ubuntu 20.04 docker container, so I am quite puzzled right now why it fails in macOS.
The text was updated successfully, but these errors were encountered: