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    89 repositories

    • scaffoldmaker

      Public
      Anatomical scaffold generator using Zinc
      Python
      •
      Other
      •36•1•6•9•Updated Aug 1, 2025Aug 1, 2025

    • mapintegratedvuer

      Public
      Integrated Map Vuer
      Vue
      •
      Apache License 2.0
      •13•1•0•3•Updated Aug 1, 2025Aug 1, 2025

    • sparc-curation-tools

      Public
      A collection of tools to help with curating SPARC datasets.
      Python
      •
      Other
      •4•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • mapclientplugins.geometryfitter

      Public
      MAP Client plugin for geometric fitting of meshes using CMLibs Zinc.
      Python
      •
      Other
      •13•0•1•0•Updated Aug 1, 2025Aug 1, 2025

    • mapclientplugins.dataembedderstep

      Public
      MAP-Client plugin for embedding data in fitted scaffolds.
      Python
      •
      Apache License 2.0
      •6•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • mapclientplugins.scaffoldcreator

      Public
      MAP Client plugin for generating meshes via scripts using OpenCMISS-Zinc.
      Python
      •
      Apache License 2.0
      •22•0•4•2•Updated Aug 1, 2025Aug 1, 2025

    • map-sidebar

      Public
      A side bar for user in sparc.science
      Vue
      •
      Apache License 2.0
      •9•0•0•5•Updated Jul 29, 2025Jul 29, 2025

    • scaffoldvuer

      Public
      PhysiomePortal Scaffold Viewer as a Vue Component
      Vue
      •
      Apache License 2.0
      •7•0•0•1•Updated Jul 29, 2025Jul 29, 2025

    • flatmapvuer

      Public
      Vue component of Flatmap viewer
      Vue
      •
      Apache License 2.0
      •6•0•0•3•Updated Jul 29, 2025Jul 29, 2025

    • map-utilities

      Public
      Repository for common Vue 3 components used by MAP components
      Vue
      •
      Apache License 2.0
      •4•0•0•3•Updated Jul 25, 2025Jul 25, 2025

    • ZincJS

      Public
      JS interface to Zinc output for displaying 3D anatomical models
      JavaScript
      •
      MIT License
      •11•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • exf2mbfxml

      Public
      A small Python application and library to take EXF formatted files and transform it into MBF Bioscience XML.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 20, 2025Jul 20, 2025

    • fieldfitter

      Public
      Scaffold/model field fitting library using OpenCMISS-Zinc.
      Python
      •
      Other
      •4•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • simulationvuer

      Public
      Vue component for a CellML-based simulation viewer.
      Vue
      •
      Apache License 2.0
      •7•1•1•0•Updated Jul 8, 2025Jul 8, 2025

    • libopencor-wasm

      Public
      WASM module of OpenCOR
      Apache License 2.0
      •2•0•0•0•Updated Jul 8, 2025Jul 8, 2025

    • plotvuer

      Public
      Process and display csv files as charts for vue. Designed specifically for use in the SPARC project
      Vue
      •
      Apache License 2.0
      •5•1•0•1•Updated Jun 24, 2025Jun 24, 2025

    • ssvtools

      Public
      Utilities for extracting information form SPARC Subject-Specific Vagus Scaffolds.
      Python
      •
      Other
      •1•0•0•0•Updated Jun 19, 2025Jun 19, 2025

    • mbfxml2ex

      Public
      A small Python application and library to take MBF Bioscience XML and transform it into ex format.
      Python
      •
      Apache License 2.0
      •11•1•2•0•Updated Jun 18, 2025Jun 18, 2025

    • scaffoldfitter

      Public
      A repository for fitting anatomical scaffolds to data.
      Python
      •
      Other
      •16•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • TARA-ScaffoldVuer

      Public
      TARA interface of ScaffoldVuer
      Vue
      •1•0•0•0•Updated May 15, 2025May 15, 2025

    • PlotComponents

      Public
      Vue components to support the SPARC Portal plot interface
      Vue
      •
      Apache License 2.0
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • PlotDataHelpers

      Public
      A Javascript library to help manipulate SPARC data into Plotly compatible form.
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • sparc-api

      Public
      SPARC Portal API
      Python
      •
      Apache License 2.0
      •15•0•0•3•Updated May 2, 2025May 2, 2025

    • mapclientplugins.mbfxml2exconverterstep

      Public
      A MAP Client plugin for converting MBF XML to ex form.
      Python
      •
      Other
      •5•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • mapclientplugins.fieldfitterstep

      Public
      MAP Client plugin for fitting fields over meshes using OpenCMISS-Zinc.
      Python
      •
      Other
      •4•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • mapclientplugins.segmentationstitcherstep

      Public
      MAP-Client plugin for interactively transforming and stitching segmentation files.
      Python
      •
      Other
      •3•0•0•1•Updated Feb 3, 2025Feb 3, 2025

    • segmentationstitcher

      Public
      Library for stitching together networks and contours segmented from multiple adjacent image blocks, including computing their relative transformations.
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Jan 29, 2025Jan 29, 2025

    • scicrunch-knowledge-testing

      Public
      Tests for checking the information on discover and elastic search are consistent.
      Python
      •
      Apache License 2.0
      •5•0•0•2•Updated Jan 15, 2025Jan 15, 2025

    • AnnotationToCOMPOSER

      Public
      Python script to translate annotation to COMPOSER CSV format
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • sparc-app

      Public
      Web Application for the SPARC Portal
      Vue
      •
      Apache License 2.0
      •17•1•0•0•Updated Dec 9, 2024Dec 9, 2024