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    32 repositories

    • scrnaseq

      Public
      Collection of public single-cell RNA-seq datasets
      Python
      •
      MIT License
      •0•1•0•1•Updated Jul 28, 2025Jul 28, 2025

    • Biocborn

      Public
      bioc objects + seaborn
      Python
      •
      MIT License
      •0•1•0•1•Updated Jul 28, 2025Jul 28, 2025

    • rds2py

      Public
      Read RDS files, in Python
      pythonr
      Python
      •
      MIT License
      •4•26•1•1•Updated Jul 28, 2025Jul 28, 2025

    • pyBiocFileCache

      Public
      Python implementation of the BiocFileCache R package
      cache
      Python
      •
      MIT License
      •2•1•0•1•Updated Jul 28, 2025Jul 28, 2025

    • mopsy

      Public
      Matrix operations
      numpymatrixscipy
      Python
      •
      MIT License
      •1•0•1•1•Updated Jul 28, 2025Jul 28, 2025

    • bioRAT

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 28, 2025Jul 28, 2025

    • TileDBArray

      Public
      TileDB backed delayed arrays for Python
      tiledbdelayedarray
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 28, 2025Jul 28, 2025

    • SummarizedExperiment

      Public
      Container class for genomic experiments
      summarizedexperiment
      Python
      •
      MIT License
      •2•5•4•1•Updated Jul 28, 2025Jul 28, 2025

    • SpatialFeatureExperiment

      Public
      Python
      •
      MIT License
      •0•1•2•1•Updated Jul 28, 2025Jul 28, 2025

    • SpatialExperiment

      Public
      Container for Spatial Experiments
      spatial-data
      Python
      •
      MIT License
      •0•2•13•2•Updated Jul 28, 2025Jul 28, 2025

    • SingleCellExperiment

      Public
      Container class for single-cell experiments
      singlecellexperiment
      Python
      •
      MIT License
      •2•7•0•1•Updated Jul 28, 2025Jul 28, 2025

    • MultiAssayExperiment

      Public
      Container class to represent and manage multi-omics genomic experiments
      multiassayexperiment
      Python
      •
      MIT License
      •1•6•0•1•Updated Jul 28, 2025Jul 28, 2025

    • IRanges

      Public
      IRanges in Python
      interval-arithmeticiranges
      Python
      •
      MIT License
      •0•3•0•1•Updated Jul 28, 2025Jul 28, 2025

    • HDF5Array

      Public
      HDF5 File-backed arrays for Python
      hdf5delayedarray
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 28, 2025Jul 28, 2025

    • GenomicRanges

      Public
      Container class to represent genomic locations and support genomic analysis
      genomicranges
      Python
      •
      MIT License
      •4•22•4•1•Updated Jul 28, 2025Jul 28, 2025

    • BiocSetup

      Public
      Quickly setup new Python packages
      Python
      •
      MIT License
      •0•1•1•1•Updated Jul 28, 2025Jul 28, 2025

    • BiocFrame

      Public
      Bioconductor-like data frames
      dataframe
      Python
      •
      MIT License
      •3•4•0•1•Updated Jul 28, 2025Jul 28, 2025

    • scruncher

      Public
      Helper functions for single-cell analysis
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 13, 2025Jul 13, 2025

    • BiocUtils

      Public
      Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.
      Python
      •
      MIT License
      •0•0•2•1•Updated Jun 20, 2025Jun 20, 2025

    • DelayedArray

      Public
      DelayedArrays, in Python
      delayedarray
      Python
      •
      MIT License
      •0•0•2•0•Updated May 7, 2025May 7, 2025

    • .github

      Public
      0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • compressed-lists

      Public
      Memory-efficient container for list-like objects
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • biocpy.github.io

      Public
      documentation and tutorial
      0•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • assorthead

      Public
      Assorted C++ headers, vendored into a Python package.
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 9, 2025Mar 9, 2025

    • developer_guide

      Public
      0•2•1•0•Updated Jan 28, 2025Jan 28, 2025

    • environments

      Public
      Conda configurations for managing BiocPy releases
      Dockerfile
      •0•0•0•0•Updated Jan 24, 2025Jan 24, 2025

    • BiocWorkshop2024

      Public
      rpythonbioconductorbiocpy
      Jupyter Notebook
      •1•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • tutorial

      Public
      tutorial for all bioconductor representations in Python
      biocpy
      TeX
      •0•2•0•0•Updated Mar 15, 2024Mar 15, 2024

    • generics

      Public archive
      BiocPy generics
      Python
      •
      MIT License
      •0•0•0•2•Updated Nov 20, 2023Nov 20, 2023

    • cpptypes

      Public archive
      Automatically generate wrappers for ctypes with C++
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 8, 2023Sep 8, 2023