Repositories list

• i-etl

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 31, 2025Jul 31, 2025

• YoyoMut

  Public
  Repository for YoyoMut: yoyo and fixated mutations recognition and 3D protein visualization

  Python

  •

  MIT License

  •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

• open-recombinhunt

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Jun 14, 2025Jun 14, 2025

• flu-warning-system

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated May 24, 2025May 24, 2025

• GIS-weighted_LASSO

  Public
  Integrative approach to feature selection combining weighted LASSO and prior biological knowldge

  lassofeature-selectionclassification+ 2gene-expression-profilesprior-knowledge

  Jupyter Notebook

  •1•5•0•0•Updated May 24, 2025May 24, 2025

• NMTF_for_subtyping

  Public
  Computational workflow for breast cancer subtyping using NMTF, node embeddings, and ML classifiers. Applied to TCGA data, as presented in CIBB 2023 (LNCS 14513).

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated May 13, 2025May 13, 2025

• BioGAN

  Public
  Python

  •1•0•0•1•Updated May 8, 2025May 8, 2025

• prior_tree_models_repo

  Public
  Prior knowledge-guided tree-based models

  regressionfeature-selectionclassification+ 2prior-knowledgegene-expression-analysis

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 15, 2025Apr 15, 2025

• pktree

  Public
  Python package for prior knowledge integration in tree-based models

  Python

  •

  MIT License

  •0•1•0•0•Updated Feb 21, 2025Feb 21, 2025

• GSEACompass

  Public
  A minimalistic app to run GSEA, pre-ranked GSEA and, mostly, do post-analysis elaboration on the results.

  electronpythondatatables+ 2gseagseapy

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• MULTI-STAR

  Public
  Multi-label subtyping and advanced recognition on cancer patients

  Jupyter Notebook

  •0•0•0•0•Updated Jan 12, 2025Jan 12, 2025

• cmls2024

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• ARDS_H-CPAP_ML

  Public
  Machine learning-based forecast of Helmet-CPAP therapy failure in Acute Respiratory Distress Syndrome patients

  machine-learningcovid-19ards+ 2predicting-h-cpap-therapy-failure-in-ards-patientsh-cpap

  0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

• CMLS

  Public
  HTML

  •

  MIT License

  •0•0•0•20•Updated Jul 9, 2024Jul 9, 2024

• WALS

  Public
  Repository for the website of the International Workshop of Web Applications for Life Sciences, co-located with ICWE 2022

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

• RGMQL

  Public
  RGMQL: Scalable and interoperable computing of heterogeneous omics big data and metadata in R/Bioconductor

  packagerbioconductor+ 4scalable-computinginteropeable-computingheterogeneous-omics-datajava

  HTML

  •2•1•0•0•Updated Feb 13, 2024Feb 13, 2024

• GeCo

  Public
  geco webpage

  JavaScript

  •0•0•0•6•Updated Nov 8, 2023Nov 8, 2023

• nmtf-web

  Public
  Documentation

  Python

  •1•0•0•0•Updated Sep 3, 2023Sep 3, 2023

• ReRa

  Public
  Supervised Relevance-Redundancy assessments for feature selection in omics-based classification

  Jupyter Notebook

  •0•2•0•0•Updated Aug 23, 2023Aug 23, 2023

• GMQL-Sync

  Public
  Shell

  •0•0•0•2•Updated Jul 22, 2023Jul 22, 2023

• TFHAZ

  Public
  R package to identify Transcription Factor High Accumulation DNA Zones

  R

  •0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

• Metadata-Manager

  Public
  Public dataset downloader for GMQL framework

  datasettransformergmql-importer

  Scala

  •

  Apache License 2.0

  •4•7•1•7•Updated Jul 7, 2023Jul 7, 2023

• DSBot

  Public
  Python

  •3•0•1•0•Updated May 3, 2023May 3, 2023

• VarSum

  Public
  Data summarization tool for 1000 Genomes Project data

  Python

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated May 1, 2023May 1, 2023

• VariantHunter

  Public
  VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.

  nextstrainsars-cov-2covid19-data+ 2gisaidsars-cov-2-variants

  Vue

  •

  Apache License 2.0

  •4•5•0•0•Updated Apr 23, 2023Apr 23, 2023

• virusurf_downloader

  Public
  virusurf downloader

  Python

  •

  Apache License 2.0

  •2•3•0•7•Updated Feb 10, 2023Feb 10, 2023

• geco_agent_loader

  Public
  GeCo-5.0

  Python

  •

  Apache License 2.0

  •0•0•0•3•Updated Feb 7, 2023Feb 7, 2023

• MutViz

  Public
  MutViz - Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types

  JavaScript

  •1•3•0•3•Updated Feb 2, 2023Feb 2, 2023

• vue-metadata

  Public
  Vue

  •

  Apache License 2.0

  •0•0•0•23•Updated Dec 30, 2022Dec 30, 2022

• GeCo-5.0

  Public
  Python

  •1•0•0•43•Updated Dec 8, 2022Dec 8, 2022