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@HimesGroup Himes Lab at the University of Pennsylvania

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    29 repositories

    • .github

      Public
      0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • AKR

      Public
      AKR Superfamily Website
      HTML
      •3•1•0•0•Updated Jul 28, 2025Jul 28, 2025

    • sapphirine

      Public
      Sensor-based Analysis of Pollution in the Philadelphia Region with Information on Neighborhoods and the Environment (SAPPHIRINE)
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • pargasite

      Public
      Pollution-Associated Risk Geospatial Analysis SITE (PARGASITE)
      R
      •
      Other
      •4•3•1•0•Updated Nov 18, 2024Nov 18, 2024

    • BMIN503

      Public
      Data Science for Biomedical Informatics (BMIN503 / EPID600)
      9•9•0•0•Updated Oct 9, 2024Oct 9, 2024

    • BMIN503_Final_Project

      Public
      Template repo for Data Science for Biomedical Informatics (BMIN503/EPID600) final project
      246•5•0•18•Updated Sep 26, 2024Sep 26, 2024

    • HLA_Typing

      Public
      Scripts to compute HLA types from GWAS results
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • LCMSQA

      Public
      Quality assessment for LC/MS data
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 13, 2024Jan 13, 2024

    • raqs

      Public
      R
      •
      Other
      •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • qmtools

      Public
      Tools for quantitative metabolomics data processing
      R
      •1•2•0•0•Updated Nov 15, 2023Nov 15, 2023

    • snpsettest

      Public
      A set-based association test using GWAS summary statistics
      R
      •
      GNU General Public License v3.0
      •3•7•0•0•Updated Sep 9, 2023Sep 9, 2023

    • realgar

      Public
      Reducing Associations by Linking Genes And transcriptomic Results (REALGAR)
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •4•4•0•0•Updated Jun 21, 2023Jun 21, 2023

    • taffeta

      Public
      RNAseq/DGE analysis pipeline
      HTML
      •
      MIT License
      •18•10•0•0•Updated Mar 24, 2023Mar 24, 2023

    • raw2mzml

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 12, 2023Jan 12, 2023

    • crispr_analysis

      Public
      Workflow used to analyze CRISPR knockout screen data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Mar 5, 2022Mar 5, 2022

    • raved

      Public
      Reproducible Analysis and Validation of Expression Data
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •9•1•0•0•Updated Dec 28, 2021Dec 28, 2021

    • k12bioinformatics

      Public
      Teaching materials developed as part of NSF project to teach bioinformatics through mobile learning
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•0•0•Updated Nov 9, 2021Nov 9, 2021

    • Multiomics-Analysis-of-Glucocorticoid-Response-Data

      Public
      Supporting codes and data of the manuscript "Multiomics Analysis Identifies BIRC3 as a Novel Glucocorticoid Response-Associated Gene"
      R
      •
      MIT License
      •1•1•0•0•Updated Sep 14, 2021Sep 14, 2021

    • shiny-server

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Sep 9, 2021Sep 9, 2021

    • prevalencemaps

      Public
      R
      •0•0•0•0•Updated Jun 14, 2021Jun 14, 2021

    • PHLcovid

      Public
      18•0•0•0•Updated Oct 1, 2020Oct 1, 2020

    • brocade

      Public
      Reproducible analysis of CHIP-Seq data
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•0•0•Updated Apr 27, 2020Apr 27, 2020

    • covid-19-data

      Public
      An ongoing repository of data on coronavirus cases and deaths in the U.S.
      Other
      •3.4k•0•0•0•Updated Mar 27, 2020Mar 27, 2020

    • Asthma_Transcriptomic_Analysis

      Public
      Integration of Asthma-Related Transcriptomic Datasets
      integrationtranscriptomicsasthma
      R
      •2•0•0•0•Updated Mar 27, 2018Mar 27, 2018

    • analysis_pipeline

      Public
      TOPMed analysis pipeline
      R
      •32•0•0•0•Updated Sep 7, 2017Sep 7, 2017

    • sprint

      Public
      Results for NEJM SPRINT Challenge
      HTML
      •2•0•0•0•Updated Feb 28, 2017Feb 28, 2017

    • asthmamaps

      Public
      County-level characterisitcs of adults with asthma in the U.S. according to BRFSS data
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 17, 2017Feb 17, 2017

    • EPID700

      Public
      Repository to Practice Using GitHub and R
      1•0•0•1•Updated Oct 18, 2016Oct 18, 2016

    • geocoding

      Public
      Code for assisting in geocoding
      R
      •17•0•0•0•Updated Mar 24, 2016Mar 24, 2016