Repositories list

• tensorflow-federated

  Public
  An open-source framework for machine learning and other computations on decentralized data.

  Python

  •

  Apache License 2.0

  •605•1•0•0•Updated Nov 17, 2025Nov 17, 2025

• rocqstar-rag

  Public
  BigRocq is a utility, that takes a Rocq (former Coq) project as input and uses domain knowladge to increase a number of theorems in the dataset by a significant factor.

  coqcode-generationdataset-augmentation+ 2rocqcoq-lsp

  TypeScript

  •

  MIT License

  •0•4•0•7•Updated Nov 16, 2025Nov 16, 2025

• kotlinx.fuzz

  Public
  Fuzzer for Kotlin libraries

  Kotlin

  •

  Apache License 2.0

  •4•111•5•0•Updated Nov 13, 2025Nov 13, 2025

• rocqstar-agentic-system

  Public
  TypeScript

  •0•7•1•0•Updated Nov 12, 2025Nov 12, 2025

• opacus

  Public
  Training PyTorch models with differential privacy

  Python

  •

  Apache License 2.0

  •386•1•0•1•Updated Nov 12, 2025Nov 12, 2025

• replacewith

  Public archive

  JetBrains-Research/replacewith’s past year of commit activity
  Kotlin

  •1•0•0•0•Updated Nov 12, 2025Nov 12, 2025

• sc-atacseq-explorer

  Public
  Single cell ATAC-Seq preprocessing for single cell explorer

  pipelineexploreratac-seq+ 2t-snesingle-cell

  Jupyter Notebook

  •1•5•0•0•Updated Nov 10, 2025Nov 10, 2025

• EnvBench

  Public
  [DL4C @ ICLR 2025] A Benchmark for Automated Environment Setup

  Python

  •

  MIT License

  •5•28•2•0•Updated Nov 9, 2025Nov 9, 2025

• bf-core

  Public archive
  Kotlin library for bus factor calculation.

  Kotlin

  •

  MIT License

  •0•1•0•0•Updated Nov 7, 2025Nov 7, 2025

• CodeCocoon-Plugin

  Public
  Kotlin

  •0•2•0•9•Updated Nov 7, 2025Nov 7, 2025

• depminer

  Public archive
  Kotlin

  •

  MIT License

  •1•5•0•0•Updated Nov 7, 2025Nov 7, 2025

• file-importance

  Public archive
  ICTL + BILSEN project on using file importance in risk assessment

  Python

  •

  MIT License

  •0•5•0•0•Updated Nov 7, 2025Nov 7, 2025

• tnm

  Public archive
  Kotlin

  •

  MIT License

  •10•14•0•0•Updated Nov 7, 2025Nov 7, 2025

• astminer

  Public archive
  A library for mining of path-based representations of code (and more)

  antlrminingcode2vec

  Kotlin

  •

  MIT License

  •81•298•1•0•Updated Nov 7, 2025Nov 7, 2025

• omnipeak

  Public
  A universal HMM-based peak caller capable of processing a broad range of ChIP-seq, ATAC-seq, and single-cell ATAC-seq datasets of different quality.

  Kotlin

  •

  MIT License

  •0•3•1•0•Updated Nov 5, 2025Nov 5, 2025

• pubtrends

  Public
  Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers

  pubmedbibliometricssemantic-scholar

  Jupyter Notebook

  •

  Apache License 2.0

  •4•49•44•1•Updated Nov 3, 2025Nov 3, 2025

• psiminer

  Public archive
  A Tool for Mining Rich Abstract Syntax Trees from Code

  data-miningminingml4code+ 1ml4se

  Kotlin

  •

  Apache License 2.0

  •13•59•0•0•Updated Oct 24, 2025Oct 24, 2025

• bus-factor-explorer

  Public archive
  A web app for exploring Bus Factor of GitHub projects by analyzing the commit history.

  gitmining-software-repositoriestruck-factor+ 1bus-factor

  Jupyter Notebook

  •

  MIT License

  •2•20•0•0•Updated Oct 24, 2025Oct 24, 2025

• TestSpark

  Public
  TestSpark - a plugin for generating unit tests. TestSpark natively integrates different AI-based test generation tools and techniques in the IDE. Started by SERG TU Delft. Currently under implementation by JetBrains Research (Software Testing Research) for research purposes.

  Kotlin

  •

  MIT License

  •27•81•34•7•Updated Oct 23, 2025Oct 23, 2025

• jbr

  Public
  JBR Genome Browser

  genome-browser

  Dockerfile

  •1•11•106•0•Updated Oct 22, 2025Oct 22, 2025

• peak-callers-analysis

  Public
  Datasets analysis and comparison scripts for SPAN semi-supervised peak analyzer

  Jupyter Notebook

  •0•0•0•0•Updated Oct 21, 2025Oct 21, 2025

• chipseq-smk-pipeline

  Public
  ChIP-Seq processing pipeline on snakemake

  visualizationquality-controlsnakemake+ 4pipelinechip-seqatac-seqpeak-calling

  Python

  •2•5•4•0•Updated Oct 16, 2025Oct 16, 2025

• bioinf-commons

  Public
  Bioinformatics library in Kotlin

  kotlinhmmbioinformatics+ 15progressmethylationdatasetfastachip-seqsamplingbed+ 8

  Kotlin

  •

  MIT License

  •3•34•1•0•Updated Oct 16, 2025Oct 16, 2025

• the-complexity-trap

  Public
  This repo accompanies the paper "The Complexity Trap: Simple Observation Masking Is as Efficient as LLM Summarization for Agent Context Management" presented at the Fourth Deep Learning for Code (DL4Code) workshop at NeurIPS 2025 and Tobias Lindenbauer's Master's Thesis.

  agentefficiencycontext-engineering

  Python

  •

  MIT License

  •0•1•0•0•Updated Oct 13, 2025Oct 13, 2025

• PIPer

  Public
  [DL4C @ NeurIPS 2025] On-Device Environment Setup via Online Reinforcement Learning

  Python

  •

  MIT License

  •0•9•0•0•Updated Sep 30, 2025Sep 30, 2025

• kinference

  Public
  Running ONNX models in vanilla Kotlin

  kotlinmachine-learningneural-networks+ 1onnx

  Kotlin

  •

  Apache License 2.0

  •9•197•6•1•Updated Sep 25, 2025Sep 25, 2025

• fishbone

  Public
  Fishbone Ishikawa diagrams construction and visualising

  JavaScript

  •

  MIT License

  •0•4•3•0•Updated Sep 24, 2025Sep 24, 2025

• span

  Public
  SPAN Peak Analyzer

  bioinformaticschip-seqpeak-caller

  Kotlin

  •

  MIT License

  •1•9•2•0•Updated Sep 24, 2025Sep 24, 2025

• kinference-primitives

  Public
  Kotlin

  •

  Apache License 2.0

  •0•5•0•1•Updated Sep 22, 2025Sep 22, 2025

• tensorflow

  Public
  An Open Source Machine Learning Framework for Everyone

  C++

  •

  Apache License 2.0

  •75k•0•0•0•Updated Sep 12, 2025Sep 12, 2025