MurrellGroup

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83 repositories

SeededAlignment.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated Aug 3, 2025Aug 3, 2025
CodonMolecularEvolution.jl
Public
Julia
•
MIT License
•3•3•6•8•Updated Aug 2, 2025Aug 2, 2025
Flatom.jl
Public
Julia
•
MIT License
•0•0•0•1•Updated Jul 30, 2025Jul 30, 2025
MurrellGroupRegistry
Public
Julia package registry for MurrellGroup
Shell
•0•0•1•0•Updated Jul 30, 2025Jul 30, 2025
Onion.jl
Public
It has layers.
Julia
•
MIT License
•4•1•1•1•Updated Jul 29, 2025Jul 29, 2025
Einops.jl
Public
Einops, now in Julia
deep-learning julia array tensor-operations einops
Julia
•
MIT License
•1•11•10•0•Updated Jul 28, 2025Jul 28, 2025
LogitSamplers.jl
Public
Sample tokens directly from logit weights
deep-learning sampler logits
Julia
•
MIT License
•0•1•1•0•Updated Jul 24, 2025Jul 24, 2025
PORPIDpipeline
Public
A pipeline for long-read UMI/PID sequencing of HIV amplicons.
Julia
•1•0•0•0•Updated Jul 18, 2025Jul 18, 2025
ProteinBenchmarkTools.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated Jul 16, 2025Jul 16, 2025
CHMMAIRRa.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated Jul 16, 2025Jul 16, 2025
ChainStorm.jl
Public
Julia
•
MIT License
•3•14•0•3•Updated Jul 15, 2025Jul 15, 2025
Flowfusion.jl
Public
Unifying flow matching and diffusion on Riemannian manifolds and discrete spaces, for generative deep learning.
deep-learning manifold diffusion flow-matching
Julia
•
MIT License
•2•23•1•1•Updated Jul 13, 2025Jul 13, 2025
Jjama3.jl
Public
Julia
•
MIT License
•3•35•5•1•Updated Jul 11, 2025Jul 11, 2025
ProteinRefolding.jl
Public
Julia
•
MIT License
•0•1•0•1•Updated Jul 11, 2025Jul 11, 2025
PyProteinMPNN.jl
Public
Julia
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MIT License
•0•0•0•0•Updated Jul 10, 2025Jul 10, 2025
PyBoltz.jl
Public
Julia bindings for Boltz
julia structure-prediction protein-folding boltz
Julia
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Other
•0•1•1•0•Updated Jul 9, 2025Jul 9, 2025
MolecularEvolution.jl
Public
A Julia framework for developing phylogenetic models
Julia
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MIT License
•4•14•14•4•Updated Jul 7, 2025Jul 7, 2025
DLProteinFormats.jl
Public
Proteins, stored nice and flat.
Julia
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MIT License
•0•0•0•0•Updated Jul 5, 2025Jul 5, 2025
Kabsch.jl
Public
Kabsch algorithm for optimally aligning two paired sets of points
julia rmsd kabsch static-arrays gpu-accelerated
Julia
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MIT License
•0•2•1•0•Updated Jul 3, 2025Jul 3, 2025
ProtPlot.jl
Public
Protein ribbon plots implemented in Julia using Makie
julia plot protein ribbon makie
Julia
•
MIT License
•1•21•3•1•Updated Jun 22, 2025Jun 22, 2025
InvariantPointAttention.jl
Public
Julia implementation of AlphaFold 2's Invariant Point Attention
deep-learning transformer alphafold2
Julia
•
MIT License
•4•7•4•0•Updated Jun 12, 2025Jun 12, 2025
TMscore.jl
Public
Julia binding to the TMscore binary for calculating TM-score between proteins
julia protein tm-score
Julia
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Other
•0•4•0•0•Updated Jun 10, 2025Jun 10, 2025
MurrellGroup.github.io
Public
HTML
•0•0•1•0•Updated Jun 3, 2025Jun 3, 2025
LowRankLayers.jl
Public
Julia
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MIT License
•0•2•0•0•Updated May 28, 2025May 28, 2025
BatchedTransformations.jl
Public
Julia
•
MIT License
•0•0•0•0•Updated May 26, 2025May 26, 2025
lineages
Public
Results from a model of global SARS-CoV-2 lineage competition
1•39•2•1•Updated May 22, 2025May 22, 2025
NNop.jl
Public
Fork of NNop.jl for registration in MurrellGroupRegistry (and possibly experimentation)
Julia
•3•0•0•0•Updated May 17, 2025May 17, 2025
ProFlowDemo.jl
Public
Julia
•
MIT License
•0•0•1•1•Updated May 16, 2025May 16, 2025
ProteinChains.jl
Public
Julia
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MIT License
•0•4•5•0•Updated May 14, 2025May 14, 2025
ColabMolecularEvolution
Public
A collection of Google Colab notebooks for phylogenetic models
Jupyter Notebook
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MIT License
•0•0•1•0•Updated May 14, 2025May 14, 2025