Repositories list

• nextflow

  Public
  A DSL for data-driven computational pipelines

  Groovy

  •

  Apache License 2.0

  •739•0•0•0•Updated Sep 6, 2025Sep 6, 2025

• OpenMS

  Public
  The codebase of the OpenMS project

  C++

  •

  Other

  •360•0•0•0•Updated Aug 11, 2025Aug 11, 2025

• napari

  Public
  napari: a fast, interactive, multi-dimensional image viewer for python

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •454•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• scanpy

  Public
  Single-cell analysis in Python. Scales to >100M cells.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •673•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• biocypher

  Public
  A unifying framework for biomedical research knowledge graphs

  Python

  •

  MIT License

  •40•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• .github

  Public
  MIT License

  •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

• CellProfiler

  Public
  An open-source application for biological image analysis

  Python

  •

  Other

  •408•0•0•0•Updated Jun 18, 2025Jun 18, 2025

• biopython

  Public
  Official git repository for Biopython (originally converted from CVS)

  Python

  •

  Other

  •1.8k•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• stardist

  Public
  StarDist - Object Detection with Star-convex Shapes

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •251•0•0•0•Updated May 30, 2025May 30, 2025

• AI-Scientist

  Public
  The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

  Jupyter Notebook

  •

  Apache License 2.0

  •1.7k•0•0•0•Updated Apr 26, 2025Apr 26, 2025

• ngl

  Public
  WebGL protein viewer

  TypeScript

  •

  MIT License

  •174•0•0•0•Updated Apr 14, 2025Apr 14, 2025