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    11 repositories

    • BENGAL

      Public
      Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
      Python
      •
      GNU General Public License v3.0
      •8•39•3•0•Updated Jul 20, 2025Jul 20, 2025

    • GeneSpectraKG

      Public
      Biocypher KG for GeneSpectra results
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • scGOclust

      Public
      Gene ontology terms to compare single cell RNA-seq data
      R
      •
      GNU General Public License v3.0
      •0•9•1•0•Updated May 6, 2025May 6, 2025

    • CATD_snakemake

      Public
      Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq datasets
      snakemakepipelinedeconvolutionsingle-cell-rna-seqdeconvolution-methodscell-type-abundance
      R
      •
      GNU General Public License v3.0
      •3•15•2•0•Updated Apr 28, 2025Apr 28, 2025

    • scGOclust_reproducibility

      Public
      Notebooks and files from the scGOclust study
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 28, 2025Mar 28, 2025

    • GBC_SUM159PT_paper

      Public
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Feb 2, 2025Feb 2, 2025

    • GeneSpectra

      Public
      GENE classification and cross-SPECies comparison of cell Types with single cell RNA-seq data
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 15, 2024Dec 15, 2024

    • GBC_SUM159PT_paper_figures

      Public
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • BENGAL_reproducibility

      Public
      BENchmark inteGrAtion strategies for cross-species anaLysis of single cell RNA sequencing data
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Jan 17, 2024Jan 17, 2024

    • CATD_reproducibility

      Public
      Notebooks and scripts for reproducing CATD paper
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • scOntoMatch

      Public
      scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies
      HTML
      •
      Other
      •0•9•0•0•Updated Oct 27, 2023Oct 27, 2023