Repositories list

• Genie

  Public
  Validation and processing of GENIE files

  pythonetlgenie+ 2dpecomponc

  Python

  •

  MIT License

  •9•14•1•1•Updated Nov 3, 2025Nov 3, 2025

• snowflake

  Public

  Sage-Bionetworks/snowflake’s past year of commit activity
  Snowflake Administration, Transformations, and Analytics

  snowflake

  Python

  •

  Apache License 2.0

  •4•5•0•3•Updated Nov 3, 2025Nov 3, 2025

• sage-monorepo

  Public

  Sage-Bionetworks/sage-monorepo’s past year of commit activity
  ✨ Monorepo for OpenChallenges, Agora, and other open-source apps developed to advance open science and collaborative research.

  angularopenapimonorepo+ 10full-stackfairdeveloper-experiencenxagoradev-exspecification-first+ 3

  TypeScript

  •

  Apache License 2.0

  •15•26•125•8•Updated Nov 2, 2025Nov 2, 2025

• Synapse-Repository-Services

  Public

  Sage-Bionetworks/Synapse-Repository-Services’s past year of commit activity
  The Synapse Repository Services project is the home of the JSON REST web services for Synapse.

  Java

  •

  Apache License 2.0

  •54•42•0•6•Updated Nov 1, 2025Nov 1, 2025

• Synapse-Stack-Builder

  Public

  Sage-Bionetworks/Synapse-Stack-Builder’s past year of commit activity
  Project for building a complete Synapse Stack

  Java

  •

  Apache License 2.0

  •24•6•0•8•Updated Nov 1, 2025Nov 1, 2025

• SynapseWebClient

  Public

  Sage-Bionetworks/SynapseWebClient’s past year of commit activity
  The web client of the Synapse REST service core

  JavaScript

  •

  Apache License 2.0

  •40•24•1•7•Updated Nov 1, 2025Nov 1, 2025

• synapse-web-monorepo

  Public

  Sage-Bionetworks/synapse-web-monorepo’s past year of commit activity
  Monorepo for Synapse Web projects

  TypeScript

  •

  Apache License 2.0

  •30•9•4•32•Updated Oct 31, 2025Oct 31, 2025

• data_curator_config

  Public
  Project configurations for the Data Curator App

  22•2•0•0•Updated Oct 31, 2025Oct 31, 2025

• BridgeWorkerPlatform

  Public

  Sage-Bionetworks/BridgeWorkerPlatform’s past year of commit activity
  General platform holding all services in Bridge

  Java

  •

  Other

  •13•1•0•3•Updated Oct 31, 2025Oct 31, 2025

• Bridge-Exporter

  Public

  Sage-Bionetworks/Bridge-Exporter’s past year of commit activity
  Worker app to aggregate Bridge uploads, survey answers, and health data daily, and export them to Synapse

  Java

  •

  Other

  •8•0•0•1•Updated Oct 31, 2025Oct 31, 2025

• synapsePythonClient

  Public

  Sage-Bionetworks/synapsePythonClient’s past year of commit activity
  Programmatic interface to Synapse services for Python

  pythonsynapse

  Python

  •

  Apache License 2.0

  •72•76•2•11•Updated Oct 31, 2025Oct 31, 2025

• agora-data-tools

  Public

  Sage-Bionetworks/agora-data-tools’s past year of commit activity
  A place for Agora's ETL and Data Testing

  Jupyter Notebook

  •

  Apache License 2.0

  •3•2•0•2•Updated Oct 31, 2025Oct 31, 2025

• JustTheDocsDataDictionary

  Public

  Sage-Bionetworks/JustTheDocsDataDictionary’s past year of commit activity
  An R package for generating content for JustTheDocs themed Schematic data model dictionary site on GitHub pages

  R

  •

  Other

  •0•2•0•0•Updated Oct 31, 2025Oct 31, 2025

• BridgeServer2-infra

  Public
  CloudFormation templates for BridgeServer2

  Shell

  •

  Other

  •9•0•0•0•Updated Oct 31, 2025Oct 31, 2025

• genie-req-ansclc-2l

  Public

  Sage-Bionetworks/genie-req-ansclc-2l’s past year of commit activity
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

• schematic

  Public

  Sage-Bionetworks/schematic’s past year of commit activity
  Package for biomedical data model and metadata ingress management

  schemabiomedical-informaticsdata-ingress

  Python

  •

  MIT License

  •26•27•1•5•Updated Oct 30, 2025Oct 30, 2025

• synapse-mcp

  Public

  Sage-Bionetworks/synapse-mcp’s past year of commit activity
  0•1•1•3•Updated Oct 30, 2025Oct 30, 2025

• service-catalog-library

  Public

  Sage-Bionetworks/service-catalog-library’s past year of commit activity
  Library of service catalog templates

  scipool

  Apache License 2.0

  •9•0•0•1•Updated Oct 30, 2025Oct 30, 2025

• aws-infra

  Public

  Sage-Bionetworks/aws-infra’s past year of commit activity
  Global Sage Bionetworks AWS Infrastructure

  scipool

  Jinja

  •

  Apache License 2.0

  •14•9•0•0•Updated Oct 30, 2025Oct 30, 2025

• genie-bpc-quac

  Public

  Sage-Bionetworks/genie-bpc-quac’s past year of commit activity
  GENIE Biopharma Collaborative Quality Assurance Checklist

  genie

  R

  •

  MIT License

  •0•1•0•2•Updated Oct 29, 2025Oct 29, 2025

• schema-to-pojo

  Public
  The schema-to-pojo project was started because we wanted to programmatically generate the Plain Old Java Objects (POJOs) from JSON schemas. More specifically we wanted to use the generated POJOs as resources of the Synapse JSON REST web services API. Since we are using the POJOs as REST resources we also wanted an easy way to marsh instances to/…

  Java

  •10•3•0•0•Updated Oct 29, 2025Oct 29, 2025

• model-ad-data-manager

  Public

  Sage-Bionetworks/model-ad-data-manager’s past year of commit activity
  Shell

  •

  Apache License 2.0

  •3•0•0•0•Updated Oct 27, 2025Oct 27, 2025

• genie-bpc-bladder-landscape-manu

  Public

  Sage-Bionetworks/genie-bpc-bladder-landscape-manu’s past year of commit activity
  Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.

  R

  •0•1•0•0•Updated Oct 27, 2025Oct 27, 2025

• genie-ddr

  Public

  Sage-Bionetworks/genie-ddr’s past year of commit activity
  An investigation into the prevalence of oncogenic DDR mutations in the GENIE database.

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

• genie-rw-response

  Public

  Sage-Bionetworks/genie-rw-response’s past year of commit activity
  Evaluation of some potential real world response algorithms in GENIE BPC

  HTML

  •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

• genie-bpc-pipeline

  Public

  Sage-Bionetworks/genie-bpc-pipeline’s past year of commit activity
  GENIE BPC pipeline scripts

  genie

  R

  •

  MIT License

  •1•4•0•3•Updated Oct 24, 2025Oct 24, 2025

• at-home-pd

  Public

  Sage-Bionetworks/at-home-pd’s past year of commit activity
  A project for handling scripts related to AT-HOME PD (syn12617210)

  R

  •3•0•3•0•Updated Oct 23, 2025Oct 23, 2025

• synapseforms

  Public

  Sage-Bionetworks/synapseforms’s past year of commit activity
  R Wrappers for Synapse Submission Forms

  R

  •

  Other

  •5•1•17•2•Updated Oct 23, 2025Oct 23, 2025

• synapse-ops-core

  Public
  Synapse Ops scripts workflows and CDK+workflow for creating self-hosted runners

  Shell

  •

  Apache License 2.0

  •4•0•0•3•Updated Oct 21, 2025Oct 21, 2025

• GENIE-Sponsored-Projects

  Public
  This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files

  genie

  Python

  •

  MIT License

  •1•5•5•1•Updated Oct 20, 2025Oct 20, 2025