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    671 repositories

    • agora-data-tools

      Public
      A place for Agora's ETL and Data Testing
      Jupyter Notebook
      •
      Apache License 2.0
      •3•2•0•3•Updated Aug 4, 2025Aug 4, 2025

    • synapse-web-monorepo

      Public
      Monorepo for Synapse Web projects
      TypeScript
      •
      Apache License 2.0
      •30•9•4•17•Updated Aug 4, 2025Aug 4, 2025

    • Genie

      Public
      Validation and processing of GENIE files
      pythonetlgeniedpecomponc
      Python
      •
      MIT License
      •9•14•1•2•Updated Aug 2, 2025Aug 2, 2025

    • sage-monorepo

      Public
      ✨ Monorepo for OpenChallenges, Agora, and other open-source apps developed to advance open science and collaborative research.
      angularopenapimonorepofull-stackfairdeveloper-experiencenxagoradev-exspecification-first
      TypeScript
      •
      Apache License 2.0
      •15•26•150•4•Updated Aug 2, 2025Aug 2, 2025

    • synapsePythonClient

      Public
      Programmatic interface to Synapse services for Python
      synapsepython
      Python
      •
      Apache License 2.0
      •72•75•3•5•Updated Aug 2, 2025Aug 2, 2025

    • genie-bpc-brca-landscape-manu

      Public
      Landscape manuscript analyses for the GENIE BPC cohort of Breast cancer
      R
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • genie-ddr

      Public
      An investigation into the prevalence of oncogenic DDR mutations in the GENIE database.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • Synapse-Repository-Services

      Public
      The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
      Java
      •
      Apache License 2.0
      •54•40•0•10•Updated Aug 1, 2025Aug 1, 2025

    • SynapseWebClient

      Public
      The web client of the Synapse REST service core
      JavaScript
      •
      Apache License 2.0
      •40•24•1•6•Updated Aug 1, 2025Aug 1, 2025

    • ChallengeWorkflowTemplates

      Public
      A collection of challenge CWL tool and workflow templates to connect with SynapseWorkflowOrchestrator.
      Common Workflow Language
      •
      Apache License 2.0
      •2•2•3•3•Updated Aug 1, 2025Aug 1, 2025

    • schematic

      Public
      Package for biomedical data model and metadata ingress management
      schemabiomedical-informaticsdata-ingress
      Python
      •
      MIT License
      •26•26•1•3•Updated Jul 31, 2025Jul 31, 2025

    • BridgeDocs

      Public
      Bridge developer portal
      JavaScript
      •15•0•0•1•Updated Jul 31, 2025Jul 31, 2025

    • synapse-docker-registry

      Public
      ECS deployment for the Synapse Docker registry
      Python
      •2•0•0•1•Updated Jul 30, 2025Jul 30, 2025

    • service-catalog-library

      Public
      Library of service catalog templates
      scipool
      Apache License 2.0
      •9•0•0•1•Updated Jul 30, 2025Jul 30, 2025

    • synapsebridgehelpers

      Public
      Python
      •2•0•2•0•Updated Jul 29, 2025Jul 29, 2025

    • synapser

      Public
      An R package providing programmatic access to Synapse
      rsynapse
      R
      •
      Apache License 2.0
      •22•37•3•2•Updated Jul 28, 2025Jul 28, 2025

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      22•2•0•0•Updated Jul 28, 2025Jul 28, 2025

    • snowflake

      Public
      Snowflake Administration, Transformations, and Analytics
      snowflake
      Python
      •
      Apache License 2.0
      •4•5•0•3•Updated Jul 28, 2025Jul 28, 2025

    • model-ad-data-manager

      Public
      Shell
      •
      Apache License 2.0
      •3•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • Sage-Governance-Documents

      Public
      Repository of Governance documents for systems like Synapse
      Apache License 2.0
      •2•1•0•0•Updated Jul 28, 2025Jul 28, 2025

    • Synapse-Stack-Builder

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •22•6•0•5•Updated Jul 26, 2025Jul 26, 2025

    • genie-gsig-prediction

      Public
      Repo exploring the predictive power of genomic signatures on clinical features (e.g. smoking)
      R
      •0•0•0•0•Updated Jul 25, 2025Jul 25, 2025

    • Synapse-Stack-Builder-PLFM-9092

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •22•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • iAtlas-infra

      Public
      Shell
      •
      Apache License 2.0
      •5•2•0•0•Updated Jul 23, 2025Jul 23, 2025

    • agora-data-manager

      Public
      Tool to manage agora data
      Shell
      •
      Apache License 2.0
      •10•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • BridgeWorkerPlatform

      Public
      General platform holding all services in Bridge
      Java
      •
      Other
      •12•1•0•3•Updated Jul 22, 2025Jul 22, 2025

    • Bridge-Exporter

      Public
      Worker app to aggregate Bridge uploads, survey answers, and health data daily, and export them to Synapse
      Java
      •
      Other
      •7•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • genie-bpc-quac-wrapper

      Public
      Wrapper for the GENIE BPC Quality Assurance Checklist for monitoring and notifications
      genie
      R
      •
      MIT License
      •1•0•0•0•Updated Jul 21, 2025Jul 21, 2025

    • synapse-markdown-it-lambda

      Public
      A lambda function to support markdown to html in Synapse
      JavaScript
      •1•0•0•0•Updated Jul 20, 2025Jul 20, 2025

    • synapse-login-aws-infra

      Public
      scipoolsage-bionetworks-it
      Apache License 2.0
      •5•0•0•0•Updated Jul 17, 2025Jul 17, 2025