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    71 repositories

    • aeon_api

      Public
      Project Aeon low-level library for interfacing with acquired data. Contains modules for raw data file io, data querying, and data processing.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•8•5•Updated Aug 1, 2025Aug 1, 2025

    • aeon_docs

      Public
      Online docs repo for Aeon.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•3•33•3•Updated Aug 1, 2025Aug 1, 2025

    • hypnose

      Public
      Olfactory behavior arena for the Harris lab at SWC
      C#
      •0•1•11•2•Updated Jul 31, 2025Jul 31, 2025

    • rc2_matlab

      Public
      Software to control the Translocator (ex rollercoaster) hardware
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jul 25, 2025Jul 25, 2025

    • sequences_neuropixel_preprocess

      Public
      pre-processing scripts for neuropixels data for the sequence project
      Jupyter Notebook
      •1•1•0•0•Updated Jul 24, 2025Jul 24, 2025

    • NeuralPlayground

      Public
      The standardised environment for the hippocampus and entorhinal cortex models
      Python
      •
      Other
      •7•73•10•3•Updated Jul 23, 2025Jul 23, 2025

    • crabs-exploration

      Public
      A toolkit for detecting and tracking crabs in the field.
      computer-visionobject-detectionneuroinformaticscomputer-vision-toolsanimal-behaviourcrabsvideo-processing-pipeline
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•8•44•11•Updated Jul 22, 2025Jul 22, 2025

    • PhieldsExperiments

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•10•0•Updated Jul 20, 2025Jul 20, 2025

    • aeon_mecha

      Public
      Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
      python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•8•53•4•Updated Jul 18, 2025Jul 18, 2025

    • aeon_template

      Public
      C#
      •1•0•4•0•Updated Jul 14, 2025Jul 14, 2025

    • aeon_exp_state_machine

      Public
      Behavioral control of the Aeon setup with a state machine
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • aeon_scratchpad

      Public
      Data Analysis code for Project Aeon
      BSD 3-Clause "New" or "Revised" License
      •0•1•3•0•Updated Jul 13, 2025Jul 13, 2025

    • aeon_habitat

      Public
      Other
      •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

    • monitor_blanking

      Public
      A TTL-controlled light switch designed to blank monitor displays for use in behavioural experiments.
      Creative Commons Attribution Share Alike 4.0 International
      •1•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • pmt_controller

      Public
      Python
      •1•0•0•0•Updated Jul 6, 2025Jul 6, 2025

    • fablab

      Public
      FabLab
      HTML
      •0•0•0•0•Updated Jun 19, 2025Jun 19, 2025

    • aeon_sleap_processing

      Public
      Project Aeon computational data pipeline for post-process refinement of SLEAP data using zoomed in cameras.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•1•Updated Jun 12, 2025Jun 12, 2025

    • aeon_experiments

      Public
      Experiment workflows for Project Aeon
      aeon-neuro
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•78•3•Updated Jun 4, 2025Jun 4, 2025

    • rc2_analysis

      Public
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jun 4, 2025Jun 4, 2025

    • arduino_code_club

      Public
      Learn how to code with an Arduino and structure your electronic circuits for all your project needs!
      C++
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • pcb_thermistor_amplifier

      Public
      0•0•0•0•Updated May 2, 2025May 2, 2025

    • aeon_feeder_v2

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • SJLab_APE_paper

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • rc2_figures

      Public
      First version of figures for the roller coaster project
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • sequences_run_PPseq

      Public
      Preparing data for and running PPseq for the sequences project
      Jupyter Notebook
      •1•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • neuroPico

      Public
      MicroPython Library for NeuroPico
      Python
      •
      Other
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • microharp

      Public
      A Harp protocol and device application framework micropython package.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•1•Updated Feb 12, 2025Feb 12, 2025

    • lasagna

      Public
      3-D imaging visualisation through slicing
      neuroscienceregistrationanatomypythonpyqtgraph
      Python
      •
      GNU General Public License v3.0
      •7•30•103•0•Updated Jan 14, 2025Jan 14, 2025

    • sequences_histology

      Public
      histology plots for sequences project
      Jupyter Notebook
      •1•1•0•0•Updated Dec 24, 2024Dec 24, 2024

    • sequences_behaviour

      Public
      scripts for running and post-hoc analysis of the 8 poke sequence behavioural task
      Jupyter Notebook
      •3•1•0•0•Updated Dec 23, 2024Dec 23, 2024