UPPMAX

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59 repositories

programming_formalisms
Public
Repository for the Programming Formalisms course
sweden programming course english uppmax formalism nbis programming-formalisms formalisms
Shell
•9•0•13•0•Updated Nov 7, 2024Nov 7, 2024
bianca_workshop
Public
R
•4•1•8•0•Updated Nov 7, 2024Nov 7, 2024
UPPMAX-documentation
Public
Python
•
Other
•1•5•29•0•Updated Nov 7, 2024Nov 7, 2024
HPC-python
Public
https://uppmax.github.io/HPC-python
Python
•2•7•9•0•Updated Nov 6, 2024Nov 6, 2024
R-python-julia-matlab-HPC
Public
Shell
•2•9•7•0•Updated Nov 3, 2024Nov 3, 2024
uppmax_intro_day_1
Public
Day 1 of the UPPMAX intro course
hpc cluster introduction intro uppmax computer-cluster uppsala-university uppsala
HTML
•
GNU General Public License v3.0
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
awk_course
Public
Teaching material for the UPPMAX Awk course
course awk uppmax uppsala
Shell
•
GNU General Public License v3.0
•1•0•1•0•Updated Nov 1, 2024Nov 1, 2024
uppmax4DL
Public
UPPMAX for Deep Learning course material
HTML
•0•1•0•0•Updated Sep 30, 2024Sep 30, 2024
install-methods
Public
Install methods for UPPMAX modules plus some helper scripts
HTML
•3•8•1•1•Updated Sep 26, 2024Sep 26, 2024
ticket_299338
Public
Notes for RT ticket 299338
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Sep 20, 2024Sep 20, 2024
ticket_297538
Public
Notes for ticket 297538
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Sep 12, 2024Sep 12, 2024
ticket_295686
Public
0•0•1•0•Updated Sep 11, 2024Sep 11, 2024
DNABERT_2
Public
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
Shell
•
Apache License 2.0
•63•0•0•0•Updated Sep 9, 2024Sep 9, 2024
ticket_298623
Public
Notes for ticket 298623
GNU General Public License v3.0
•0•0•0•0•Updated Sep 6, 2024Sep 6, 2024
uppmax_intro_python
Public
Shell
•0•0•0•0•Updated Sep 6, 2024Sep 6, 2024
ticket_297240
Public
Ticket 297240
Python
•
GNU General Public License v3.0
•0•0•0•0•Updated Aug 26, 2024Aug 26, 2024
ticket_296259
Public
Ticket 296259
sam rust-lang bam uppmax bianca sam-format bam-format vartrix
Shell
•
GNU General Public License v3.0
•0•0•0•0•Updated Aug 6, 2024Aug 6, 2024
ticket_296149
Public
Ticket 296149
ssh rsync uppmax rackham darsync dardel
GNU General Public License v3.0
•0•0•0•0•Updated Jul 29, 2024Jul 29, 2024
ticket_295455
Public
Ticket 295455
R
•
GNU General Public License v3.0
•0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
ticket_296478
Public
Notes and code for ticket 296478
R
•
GNU General Public License v3.0
•0•0•1•0•Updated Jul 26, 2024Jul 26, 2024
ticket_296660
Public
Notes and code for ticket 296660
GNU General Public License v3.0
•0•0•0•0•Updated Jul 25, 2024Jul 25, 2024
ticket_293272
Public
Ticket 293272
Shell
•
GNU General Public License v3.0
•0•0•0•0•Updated May 31, 2024May 31, 2024
darsync
Public
Helper script to migrate data to Dardel
Python
•0•0•2•0•Updated May 3, 2024May 3, 2024
programming_formalisms_intro
Public
Programming formalisms intro
Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Apr 21, 2024Apr 21, 2024
uppmax_on_dardel
Public
Using singularity to create a near-identical uppmax environment (experimental)
Singularity
•2•0•0•0•Updated Feb 9, 2024Feb 9, 2024
uppmax_intro_cases
Public
0•0•0•0•Updated Jan 14, 2024Jan 14, 2024
uppmax_intro
Public
0•0•1•0•Updated Nov 30, 2023Nov 30, 2023
uppmax_in_a_can
Public
Using singularity to create a near-identical uppmax environment (experimental)
Singularity
•2•7•1•1•Updated Nov 27, 2023Nov 27, 2023
softwareaccounting
Public
SAMS software accounting system
Python
•
GNU General Public License v2.0
•3•0•0•0•Updated Nov 16, 2023Nov 16, 2023
jobstats
Public
UPPMAX jobstats script
Perl
•0•6•3•0•Updated Nov 16, 2023Nov 16, 2023