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    • Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      5420Updated Jul 8, 2025Jul 8, 2025
    • This repository contains all the modules to split and train a binary classification model to predict NF1 null and wildtype genotype.
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      2001Updated Jul 8, 2025Jul 8, 2025
    • Image2Image Translation Model Optimization and Training to Predict Stains from Brightfield with Cell Painting Data
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1002Updated Jul 3, 2025Jul 3, 2025
    • Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      23211Updated Jul 3, 2025Jul 3, 2025
    • nViz

      Public
      A tool for creating and visualizing n-dimensional microscopy images.
      Python
      BSD 3-Clause "New" or "Revised" License
      31177Updated Jul 3, 2025Jul 3, 2025
    • Image-based profiling and machine learning to predict failing vs. non-failing cardiac fibroblasts
      Jupyter Notebook
      Other
      1531Updated Jul 2, 2025Jul 2, 2025
    • Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      2003Updated Jul 2, 2025Jul 2, 2025
    • For developing virtual staining models
      BSD 3-Clause "New" or "Revised" License
      1001Updated Jul 1, 2025Jul 1, 2025
    • Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1020Updated Jun 27, 2025Jun 27, 2025
    • Image analysis and image-based profiling of pediatic cancer cell lines to extract morphological profiles.
      Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      5421Updated Jun 27, 2025Jun 27, 2025
    • Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      3160Updated Jun 26, 2025Jun 26, 2025
    • Image analysis and image-based profiling of a fibrosis drug screen to identify compound hits using a machine learning model.
      Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      2370Updated Jun 26, 2025Jun 26, 2025
    • Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      5320Updated Jun 25, 2025Jun 25, 2025
    • BuSCar

      Public
      Python
      1110Updated Jun 25, 2025Jun 25, 2025
    • playbooks

      Public
      Playbooks relevant to the operations of the Way Lab and similar labs.
      Shell
      Creative Commons Zero v1.0 Universal
      1051Updated Jun 24, 2025Jun 24, 2025
    • Demonstrating capabilities with the University of Colorado Anschutz (UCA) Isilon storage solution using Python.
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1050Updated Jun 24, 2025Jun 24, 2025
    • Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1020Updated Jun 19, 2025Jun 19, 2025
    • A wizard to guide you through the forest of single-cell data.
      BSD 3-Clause "New" or "Revised" License
      0100Updated Jun 6, 2025Jun 6, 2025
    • .github

      Public
      BSD 3-Clause "New" or "Revised" License
      1000Updated May 23, 2025May 23, 2025
    • Temporal Difference Variational Auto-Encoder (TD-VAE) (Implementation in PyTorch)
      Python
      30000Updated May 14, 2025May 14, 2025
    • Allows the user to compare groups of data specified in a tidy pandas dataframe with ease.
      Python
      BSD 3-Clause "New" or "Revised" License
      1330Updated May 7, 2025May 7, 2025
    • Analysis notebooks applying mean average Precision (mAP) to the CFReT screen image-based profiles dataset.
      Jupyter Notebook
      1050Updated May 1, 2025May 1, 2025
    • This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      5551Updated Apr 23, 2025Apr 23, 2025
    • HTML
      BSD 3-Clause "New" or "Revised" License
      1000Updated Mar 31, 2025Mar 31, 2025
    • Analysis repository for the pyroptosis morphology map
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      13150Updated Mar 25, 2025Mar 25, 2025
    • Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1010Updated Mar 17, 2025Mar 17, 2025
    • Homepage for all happenings in the Way Lab at CU Anschutz
      SCSS
      BSD 3-Clause "New" or "Revised" License
      9420Updated Mar 11, 2025Mar 11, 2025
    • This repo aims to track cells in the best way possible
      BSD 3-Clause "New" or "Revised" License
      1000Updated Feb 25, 2025Feb 25, 2025
    • Cloud Storage bucket on Google Cloud for Saguaro and UdeM data transfer.
      CUE
      1000Updated Feb 4, 2025Feb 4, 2025
    • CPBS7601

      Public
      Course on computing skills in biomedical informatics
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      9201Updated Jan 14, 2025Jan 14, 2025