Skip to content

@clinicalml Sontag Lab

Change the repository type filter

All

    Repositories list

    65 repositories

    • collaborative-effort-scaling

      Public
      Jupyter Notebook
      •
      MIT License
      •0•4•0•0•Updated Nov 4, 2025Nov 4, 2025

    • scset

      Public
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•5•0•0•Updated May 16, 2025May 16, 2025

    • uti-causal-inference

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • realhumaneval

      Public
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •4•22•0•0•Updated Nov 5, 2024Nov 5, 2024

    • t2dm_provider_variation_analysis

      Public
      Code for Variation in First-line Type 2 Diabetes Treatment due to eGFR and Provider Preferences: A Novel Statistical Analysis. Christina X Ji, Saul Blecker, Mic…
      Python
      •0•0•0•0•Updated Sep 14, 2024Sep 14, 2024

    • sc-foundation-eval

      Public
      Code for evaluating single cell foundation models scBERT and scGPT
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •5•46•2•0•Updated Aug 25, 2024Aug 25, 2024

    • large-scale-temporal-shift-study

      Public
      Code for Large-Scale Study of Temporal Shift in Health Insurance Claims. Christina X Ji, Ahmed M Alaa, David Sontag. CHIL, 2023. https://arxiv.org/abs/2305.0508…
      Python
      •0•5•6•0•Updated Aug 14, 2024Aug 14, 2024

    • seq_to_final_benchmark

      Public
      Code for Seq-to-Final: A Benchmark for Tuning from Sequential Distributions to a Final Time Point. Christina X Ji, Ahmed M Alaa, David Sontag. https://arxiv.org…
      Python
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • finding-decision-heterogeneity-regions

      Public
      Code for "Finding Regions of Heterogeneity in Decision-Making via Expected Conditional Covariance" at NeurIPS 2021 https://arxiv.org/abs/2110.14508
      Jupyter Notebook
      •1•3•0•0•Updated Jun 18, 2024Jun 18, 2024

    • clinicalml-scBERT-NMI

      Public
      analysis code to reproduce results in NMI submission
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Jun 1, 2024Jun 1, 2024

    • co-llm

      Public
      Co-LLM: Learning to Decode Collaboratively with Multiple Language Models
      Python
      •8•126•5•0•Updated May 7, 2024May 7, 2024

    • onboarding_human_ai

      Public
      Onboarding Humans to work with AI: Algorithms to find regions and describe them in natural language that show how humans should collaborate with AI (NeurIPS23)
      aierrordescriptionregionauditing-datallm
      Jupyter Notebook
      •2•12•0•0•Updated Mar 15, 2024Mar 15, 2024

    • SCOPE

      Public
      Codebase for SCOPE architecture.
      Python
      •2•2•0•0•Updated Feb 7, 2024Feb 7, 2024

    • human_ai_deferral

      Public
      Human-AI Deferral Evaluation Benchmark (Learning to Defer) AISTATS23
      Python
      •2•22•1•0•Updated Jan 8, 2024Jan 8, 2024

    • teaching-to-understand-ai

      Public
      Code and webpages for our study on teaching humans to defer to an AI
      Jupyter Notebook
      •0•12•0•0•Updated Nov 6, 2023Nov 6, 2023

    • TabLLM

      Public
      Python
      •
      MIT License
      •57•335•18•0•Updated Nov 2, 2023Nov 2, 2023

    • omop-learn

      Public
      Python package for machine learning for healthcare using a OMOP common data model
      sarddeep-modelsomop-cdm-database
      Python
      •
      MIT License
      •27•111•2•0•Updated Jun 17, 2023Jun 17, 2023

    • censored-falsification

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 17, 2023May 17, 2023

    • rct-obs-falsification

      Public
      Code for paper, "Falsification of Internal and External Validity in Observational Studies via Conditional Moment Restrictions." This repo is currently under co…
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Apr 22, 2023Apr 22, 2023

    • vae_ssl

      Public
      Scalable semi-supervised learning with deep variational autoencoders
      Jupyter Notebook
      •
      MIT License
      •2•9•0•2•Updated Feb 10, 2023Feb 10, 2023

    • active_learn_to_defer

      Public
      Code for Sample Efficient Learning of Predictors that Complement Humans (ICML 2022)
      Python
      •2•5•0•0•Updated Jan 28, 2023Jan 28, 2023

    • learn-to-defer

      Public
      Code for "Consistent Estimators for Learning to Defer to an Expert" (ICML 2020)
      Jupyter Notebook
      •
      MIT License
      •6•15•0•15•Updated Jan 28, 2023Jan 28, 2023

    • cfrnet

      Public
      Counterfactual Regression
      Python
      •
      MIT License
      •84•319•3•0•Updated Dec 7, 2022Dec 7, 2022

    • ief

      Public
      Train pharmacodynamic deep generative models to model disease progression
      Jupyter Notebook
      •
      MIT License
      •1•6•0•0•Updated Dec 2, 2022Dec 2, 2022

    • ml_mmrf

      Public
      Machine Learning with data from the Multiple Myeloma Research Foundation
      Jupyter Notebook
      •
      MIT License
      •1•9•2•0•Updated Dec 2, 2022Dec 2, 2022

    • rct-obs-extrapolation

      Public
      Code for paper, "Falsification before Extrapolation in Causal Effect Estimation"
      Jupyter Notebook
      •
      MIT License
      •2•3•0•0•Updated Sep 27, 2022Sep 27, 2022

    • cotrain-prompting

      Public
      Code for co-training large language models (e.g. T0) with smaller ones (e.g. BERT) to boost few-shot performance
      Python
      •
      MIT License
      •3•17•0•0•Updated Sep 23, 2022Sep 23, 2022

    • parametric-robustness-evaluation

      Public
      Code for paper "Evaluating Robustness to Dataset Shift via Parametric Robustness Sets"
      Python
      •
      MIT License
      •5•8•0•0•Updated Jul 6, 2022Jul 6, 2022

    • wilds

      Public
      A machine learning benchmark of in-the-wild distribution shifts, with data loaders, evaluators, and default models.
      Python
      •
      MIT License
      •135•0•0•0•Updated Apr 4, 2022Apr 4, 2022

    • prancer

      Public
      Platform enabling Rapid Annotation for Clinical Entity Recognition
      JavaScript
      •
      MIT License
      •13•49•1•8•Updated Mar 29, 2022Mar 29, 2022