Common Workflow Language

All

33 repositories

cwltest
Public
Framework for testing CWL tools and workflows
common-workflow-language cwl
Python
•
Apache License 2.0
•18•17•13•0•Updated Jan 30, 2025Jan 30, 2025
cwltool
Public
Common Workflow Language reference implementation
science containers common-workflow-language cwl workflows commonwl sciworkflows
Python
•
Apache License 2.0
•231•340•434•42•Updated Jan 30, 2025Jan 30, 2025
cwl-utils
Public
Python utilities for CWL
common-workflow-language cwl commonwl
Python
•
Apache License 2.0
•18•39•27•9•Updated Jan 30, 2025Jan 30, 2025
cwljava
Public
Java SDK for the Common Workflow Language standards
cwl commonwl java
Java
•8•13•7•1•Updated Jan 29, 2025Jan 29, 2025
schema_salad
Public
Semantic Annotations for Linked Avro Data
Python
•
Apache License 2.0
•62•76•78•8•Updated Jan 29, 2025Jan 29, 2025
cwlviewer
Public
A web application to view and share Common Workflow Language workflows
cwl workflows java workflow common-workflow-language
Java
•
Apache License 2.0
•28•46•57•5•Updated Jan 22, 2025Jan 22, 2025
cwl-v1.3
Public
workflow
Common Workflow Language
•
Apache License 2.0
•4•4•33•9•Updated Jan 13, 2025Jan 13, 2025
cwl-upgrader
Public
Upgrade CWL syntax to a newer version
cwl commonwl
Python
•
Apache License 2.0
•3•5•9•2•Updated Jan 2, 2025Jan 2, 2025
common-workflow-language
Public
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
science workflow containers commonwl sciworkflows common-workflow-language cwl workflows
Common Workflow Language
•
Apache License 2.0
•196•1.5k•221•21•Updated Dec 5, 2024Dec 5, 2024
cwl-v1.2
Public
Released CWL v1.2.1 specification
workflow
Common Workflow Language
•
Apache License 2.0
•22•35•45•3•Updated Dec 5, 2024Dec 5, 2024
cwl-v1.1
Public
Current stable CWL v1.1 specification
workflow cwl
Common Workflow Language
•
Apache License 2.0
•11•7•0•6•Updated Dec 5, 2024Dec 5, 2024
common-workflow-language.github.io
Public
GitHub pages source for the main CWL website, please send PRs to https://github.com/common-workflow-language/cwl-website
HTML
•6•4•0•0•Updated Oct 29, 2024Oct 29, 2024
cwl-website
Public
www.commonwl.org
common-workflow-language cwl
JavaScript
•
Apache License 2.0
•20•10•18•3•Updated Oct 29, 2024Oct 29, 2024
user_guide
Public
The CWL v1.0 - v1.2 user guide
workflow common-workflow-language cwl workflows
Common Workflow Language
•
Other
•68•42•73•21•Updated Oct 20, 2024Oct 20, 2024
workflow-service
Public
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
python
Python
•
Apache License 2.0
•21•36•25•4•Updated Jun 26, 2024Jun 26, 2024
governance
Public
Holds public material generated by and for the CWL board.
cwl
HTML
•3•4•6•1•Updated May 22, 2024May 22, 2024
cwlcon2024
Public
Website for the 2024 CWL Conference
HTML
•
GNU General Public License v3.0
•0•1•11•0•Updated May 15, 2024May 15, 2024
cwldep
Public
Common Workflow Language dependency manager
Python
•
Apache License 2.0
•3•9•0•1•Updated May 6, 2024May 6, 2024
w3id.org
Public
Website source code for w3id.org
HTML
•1.3k•0•0•0•Updated Apr 5, 2024Apr 5, 2024
cwlprov-py
Public
cwlprov: Command line tool and Python API to explore Research Objects containing provenance of Common Workflow Language executions
python provenance cwl bagit research-object prov
Python
•
Apache License 2.0
•3•3•1•2•Updated Aug 2, 2023Aug 2, 2023
cwlprov
Public
Profile for provenance research object of a CWL workflow run
workflow linked-data rdf provenance cwl research-object prov cwlprov bagit
Apache License 2.0
•3•17•3•0•Updated Dec 20, 2022Dec 20, 2022
.github
Public
Default community health files for the CWL project
Apache License 2.0
•1•3•0•0•Updated Oct 17, 2022Oct 17, 2022
media
Public
CWL logo source
cwl
Other
•2•4•2•0•Updated Dec 10, 2021Dec 10, 2021
acd2cwl
Public archive
CWL generator for ACD (EMBOSS) files
commonwl
Python
•
MIT License
•1•3•0•1•Updated Apr 29, 2021Apr 29, 2021
pypi2cwl
Public
python
Python
•
Other
•1•1•0•0•Updated Apr 29, 2021Apr 29, 2021
cwl2argparse
Public
cwl2argparse generates an argparse definition from CWL tool arguments that can be pasted in a Python program and used
Common Workflow Language
•
Apache License 2.0
•4•9•0•0•Updated Apr 29, 2021Apr 29, 2021
for_decision_makers
Public
One page CWL explainer for Business/policy decision makers
Apache License 2.0
•1•1•1•0•Updated Jul 2, 2020Jul 2, 2020
for_novices
Public
One page CWL explainer for workflow novices
2•1•2•0•Updated Jul 2, 2020Jul 2, 2020
GSoD-proposals-2019
Public
Apache License 2.0
•1•1•0•0•Updated Jul 2, 2020Jul 2, 2020
conformance
Public
Location to store the results of CWL conformance testing
Apache License 2.0
•1•1•0•0•Updated Jul 2, 2020Jul 2, 2020