Repositories list

• OrthoEvolution

  Public
  An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

  pythonshellbash+ 17data-sciencebioinformaticsgeneticsbiologyftpsgephylogenetics+ 10

  Python

  •4•29•17•17•Updated Oct 31, 2024Oct 31, 2024

• awesome-reproducible-R

  Public
  An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.

  rreproducible-researchreproducible-science+ 4ropenscir-consortiumr-corertools

  R

  •

  The Unlicense

  •0•13•1•0•Updated Oct 1, 2023Oct 1, 2023

• rinse

  Public
  A configurable installer CLI for installing R from source (sudo and non-sudo).

  clirinstaller+ 2r-programmingpackage-management

  Python

  •

  MIT License

  •1•5•12•4•Updated Jul 17, 2023Jul 17, 2023

• pyDAVID

  Public
  A python3 wrapper around the DAVID API

  apiannotationdavid+ 1python3

  Python

  •

  MIT License

  •0•1•3•0•Updated Dec 16, 2022Dec 16, 2022

• github-readme-templates

  Public
  Easy to use README templates for a python project or python module

  githubmarkdownreadme+ 1readme-template

  Other

  •4•4•0•0•Updated Aug 2, 2022Aug 2, 2022

• htseq-count-cluster

  Public
  A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

  clirnaseqhtseq-count+ 4clustersgehtseqhtseq-count-cluster

  Python

  •

  MIT License

  •0•4•5•0•Updated Feb 25, 2022Feb 25, 2022

• datasnakes.github.io

  Public
  This is the website for the Datasnakes.

  website

  JavaScript

  •1•1•2•0•Updated Feb 24, 2022Feb 24, 2022

• snakemold

  Public
  managementcookiecutterpython3+ 1project-management

  Python

  •

  MIT License

  •0•0•1•0•Updated Jul 15, 2020Jul 15, 2020

• snakeutils

  Public
  A collection of tools used by the Datasnakes in their various github projects.

  python3

  Python

  •

  MIT License

  •0•0•3•0•Updated Jul 15, 2020Jul 15, 2020

• cookiecutter-pypackage-travisci

  Public
  A cookiecutter template for creating a python project & using travis ci for continuous integration.

  pythontravis-cicookiecutter+ 2python-packagecookiecutter-template

  Python

  •

  Other

  •0•3•0•0•Updated Jun 26, 2020Jun 26, 2020

• open-source-ideas

  Public
  💡 Submit ideas for science-related projects or packages here. 💡

  pythonopen-sourceopen-science+ 2ideasrstats

  0•2•1•0•Updated Oct 29, 2019Oct 29, 2019

• beRi

  Public
  beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R

  clipackage-managerenvironment+ 6hackathonpython3package-managementhackseq18biohackathonr

  Python

  •

  MIT License

  •0•14•8•0•Updated Oct 28, 2019Oct 28, 2019

• renv

  Public
  Creating virtual environments for R.

  pythonclir+ 7hackathonreproducible-researchpackage-managementvirtual-environmentrenvproject-environmentbiohackathon

  Python

  •

  MIT License

  •0•17•15•0•Updated Oct 24, 2019Oct 24, 2019

• hackseq19docs

  Public
  View team beRi's hackseq19 presentation. 📄

  hackseqberihackseq19

  CSS

  •

  MIT License

  •0•0•0•0•Updated Oct 21, 2019Oct 21, 2019

• get-beri

  Public
  rberidatasnakes+ 1hackseq18

  CSS

  •

  MIT License

  •0•0•2•0•Updated Oct 14, 2019Oct 14, 2019

• archives

  Public
  💀 Where everything goes to die. 💀

  archivespython3archived+ 1archive

  Python

  •0•0•0•0•Updated Jul 29, 2019Jul 29, 2019

• orthoevol-snakemake

  Public
  A snakemake workflow for the OrthoEvol python package.

  snakemakeorthology-inferencesnakemake-workflow+ 2snakemake-pipelinesorthoevol

  Python

  •

  MIT License

  •0•1•0•0•Updated Jul 16, 2019Jul 16, 2019

• roxygen-tags

  Public
  A comprehensive list of roxygen tags and their use cases. 🏷️

  documentationtagsroxygen+ 2roxygen2roxygen-documentation

  The Unlicense

  •0•4•1•0•Updated May 14, 2019May 14, 2019

• shinyLimma

  Public
  R

  •

  Other

  •0•0•0•0•Updated May 7, 2019May 7, 2019

• py3utils

  Public
  Useful python utils for the everyday programmer.

  Python

  •

  MIT License

  •0•1•0•0•Updated Apr 10, 2019Apr 10, 2019

• rut

  Public
  A cli of r utilities aimed at package and .Rprofile management.

  cranrmanager+ 6projectsjetpackpackage-managementpackratclirprofile-management

  Python

  •

  MIT License

  •0•4•9•0•Updated Apr 3, 2019Apr 3, 2019

• beri-isc-proposal

  Public
  An isc proposal to the R Consortium to elicit their support for beRi.

  bioinformaticsrreproducible-research+ 4ropenscir-consortiumisc-proposalr-core

  TeX

  •0•2•2•0•Updated Dec 18, 2018Dec 18, 2018

• python-hands-on-tutorial

  Public
  A hands-on Python3 tutorial. 🐍

  interactivebiologypython3+ 1python-tutorial

  Python

  •

  MIT License

  •0•4•1•0•Updated Dec 8, 2018Dec 8, 2018

• RNASeek

  Public
  A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma

  rna-seqrshiny+ 5rnaseqshiny-appshtseqdeseq2count-table

  HTML

  •0•2•4•0•Updated Dec 8, 2018Dec 8, 2018

• shinyconfig

  Public
  An R package that aids in the configuration and setup of shiny apps.

  shinyconfiguration

  R

  •

  Other

  •0•0•0•0•Updated Dec 8, 2018Dec 8, 2018

• semver.org

  Public
  Semantic Versioning spec and website

  CSS

  •283•0•0•0•Updated Dec 3, 2018Dec 3, 2018

• jetpack

  Public
  A friendly package manager for R

  rinstalljetpack+ 2managepackrat

  R

  •

  Other

  •16•0•0•0•Updated Oct 14, 2018Oct 14, 2018

• explore

  Public
  Community-curated topic pages on GitHub

  Ruby

  •

  Creative Commons Attribution 4.0 International

  •13k•0•1•0•Updated Sep 11, 2018Sep 11, 2018

• up-for-grabs.net

  Public
  Jump in!

  JavaScript

  •

  Other

  •2.1k•0•0•0•Updated Aug 23, 2018Aug 23, 2018

• pyVariant

  Public archive
  A pipeline to call variants for RNASeq implemented with python.

  gatkvariant-calling

  0•0•1•0•Updated Jul 19, 2018Jul 19, 2018