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    34 repositories

    • minisv.py

      Public
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      Python
      •1•1•0•0•Updated Feb 2, 2026Feb 2, 2026

    • myloasm

      Public
      A new high-resolution long-read metagenome assembler for even noisy reads
      Rust
      •
      MIT License
      •5•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • breakinator

      Public
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      Rust
      •2•0•0•0•Updated Jan 21, 2026Jan 21, 2026

    • chromap

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      C++
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      MIT License
      •27•0•0•0•Updated Jan 18, 2026Jan 18, 2026

    • longcallD

      Public
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      C
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      MIT License
      •5•1•0•0•Updated Jan 14, 2026Jan 14, 2026

    • ropebwt3

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      C
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      Other
      •7•0•0•0•Updated Jan 14, 2026Jan 14, 2026

    • hlilab.github.io

      Public
      SCSS
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      Other
      •1•16•0•0•Updated Jan 14, 2026Jan 14, 2026

    • miniprot

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      C
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      MIT License
      •21•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • yak

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      C
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      MIT License
      •11•0•0•0•Updated Dec 30, 2025Dec 30, 2025

    • gfatools

      Public
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      C
      •22•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • minimap2

      Public
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      C
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      Other
      •450•0•0•0•Updated Dec 13, 2025Dec 13, 2025

    • T1K

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      C
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      MIT License
      •13•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • longdust

      Public
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      C
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      MIT License
      •3•2•0•1•Updated Nov 24, 2025Nov 24, 2025

    • hifiasm-meta

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      C++
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      MIT License
      •104•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • FuFiHLA

      Public
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      Python
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      MIT License
      •2•3•0•0•Updated Nov 19, 2025Nov 19, 2025

    • minisplice

      Public
      Scoring GT/AG sites for improving spliced alignment
      C
      •3•0•0•0•Updated Nov 11, 2025Nov 11, 2025

    • minisv

      Public
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      JavaScript
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      MIT License
      •3•2•0•0•Updated Oct 27, 2025Oct 27, 2025

    • bwa-mem2

      Public
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      C++
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      Other
      •119•1•0•0•Updated Oct 15, 2025Oct 15, 2025

    • bedtk

      Public
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      C
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      MIT License
      •19•1•0•0•Updated Aug 25, 2025Aug 25, 2025

    • pangene

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      C
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      MIT License
      •14•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • minigraph

      Public
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      C
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      MIT License
      •40•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • minigff

      Public
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      JavaScript
      •1•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • minipileup

      Public
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      C
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      MIT License
      •9•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • .github

      Public
      0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • hifiasm

      Public
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      C++
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      MIT License
      •104•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • Immuannot

      Public
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      Python
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      MIT License
      •6•1•0•0•Updated Mar 13, 2025Mar 13, 2025

    • ntsm

      Public
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      C++
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      MIT License
      •1•3•0•0•Updated Nov 25, 2024Nov 25, 2024

    • compleasm

      Public
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      Python
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      Apache License 2.0
      •21•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • colorSV

      Public
      somatic SV calling on matched tumor-normal co-assembly graphs
      C++
      •3•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • cgranges

      Public
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      C
      •
      MIT License
      •19•0•0•0•Updated May 28, 2024May 28, 2024