Repositories list

• G2PT

  Public
  Jupyter Notebook

  •

  MIT License

  •5•16•2•0•Updated Aug 1, 2025Aug 1, 2025

• cellmaps_pipeline

  Public
  Python

  •

  MIT License

  •2•11•0•0•Updated Jul 30, 2025Jul 30, 2025

• cellmaps_vnn

  Public
  Python

  •

  MIT License

  •0•0•1•0•Updated Jul 28, 2025Jul 28, 2025

• cellmaps_hierarchyeval

  Public
  Code for hierarchy evaluation

  Python

  •

  MIT License

  •1•0•0•0•Updated Jul 25, 2025Jul 25, 2025

• cellmaps_generate_hierarchy

  Public
  Python

  •

  MIT License

  •1•0•1•0•Updated Jul 25, 2025Jul 25, 2025

• cellmaps_coembedding

  Public
  Python

  •

  MIT License

  •2•0•1•0•Updated Jul 25, 2025Jul 25, 2025

• cellmaps_ppi_embedding

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Jul 25, 2025Jul 25, 2025

• cellmaps_image_embedding

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Jul 25, 2025Jul 25, 2025

• cellmaps_ppidownloader

  Public
  Python

  •

  MIT License

  •1•0•2•0•Updated Jul 25, 2025Jul 25, 2025

• cellmaps_imagedownloader

  Public
  Python

  •

  MIT License

  •1•0•5•0•Updated Jul 25, 2025Jul 25, 2025

• cellmaps_utils

  Public
  Python

  •

  MIT License

  •1•1•4•0•Updated Jul 25, 2025Jul 25, 2025

• cellmaps_annotate_hierarchy

  Public
  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Jul 7, 2025Jul 7, 2025

• test_cyweb_service_app

  Public
  Python

  •

  Other

  •0•1•0•0•Updated Jul 3, 2025Jul 3, 2025

• nest_vnn

  Public
  NeST-VNN repo

  Python

  •

  MIT License

  •5•12•1•1•Updated Jun 13, 2025Jun 13, 2025

• networkx_cyweb_analyzer

  Public
  Python

  •

  Other

  •0•0•0•0•Updated May 30, 2025May 30, 2025

• agent_evaluation

  Public
  Supports papers on the development and evaluation of analyst and reviewer agents. Generate and evaluate mechanistic hypotheses derived from datasets.

  Jupyter Notebook

  •

  MIT License

  •1•2•8•3•Updated Apr 23, 2025Apr 23, 2025

• cansrmapp

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

• cookiecutter-musicpypackage

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•1•0•Updated Apr 1, 2025Apr 1, 2025

• KEGGscape

  Public
  A Cytoscape app for importing KGML(KEGG pathway XML)

  Java

  •

  Apache License 2.0

  •11•24•19•0•Updated Mar 8, 2025Mar 8, 2025

• Object_List_Page

  Public
  A simple list/index page for different kinds of objects

  TypeScript

  •0•0•0•0•Updated Mar 8, 2025Mar 8, 2025

• open-cyweb

  Public
  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

• cdcytojslayout

  Public
  JavaScript

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• network-viewer

  Public
  TypeScript

  •1•2•0•8•Updated Jan 16, 2025Jan 16, 2025

• drugcell-landing-page

  Public
  JavaScript

  •

  MIT License

  •1•0•0•2•Updated Jan 4, 2025Jan 4, 2025

• drugcell-analysis-webapp

  Public
  TypeScript

  •0•0•0•0•Updated Jan 4, 2025Jan 4, 2025

• drugcell-web-app

  Public
  JavaScript

  •1•1•0•19•Updated Jan 3, 2025Jan 3, 2025

• example_service_apps

  Public
  Python

  •0•0•0•0•Updated Dec 24, 2024Dec 24, 2024

• llm_evaluation_for_gene_set_interpretation

  Public
  Code space for 'Evaluation of large language models for discovery of gene set function'

  Jupyter Notebook

  •

  MIT License

  •7•36•2•0•Updated Dec 17, 2024Dec 17, 2024

• CM4AI_LLM_Challenge

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• CM4AI_VNN_Challenge

  Public
  0•0•0•0•Updated Nov 5, 2024Nov 5, 2024