Repositories list

• map-ir-pipeline

  Public
  Prototype demonstration of stacked generalisation method used in https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000633#sec010

  R

  •1•0•34•1•Updated Nov 15, 2024Nov 15, 2024

• vector_atlas_training_2024

  Public
  0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• sdmtools

  Public
  Helper functions for workflows used in modelling species distributions

  R

  •

  Other

  •3•7•21•0•Updated Oct 30, 2024Oct 30, 2024

• epiwave

  Public
  lowest-level functional interface for GPreff

  TeX

  •5•2•8•1•Updated Oct 29, 2024Oct 29, 2024

• epiwave.pipelines

  Public
  R

  •3•0•14•0•Updated Oct 10, 2024Oct 10, 2024

• epiwave.params

  Public
  R

  •0•0•1•0•Updated Oct 10, 2024Oct 10, 2024

• idpalette

  Public
  R

  •

  MIT License

  •0•5•3•0•Updated Oct 7, 2024Oct 7, 2024

• conmat

  Public
  Create Contact Matrices from Population Data

  rpublic-healthinfectious-diseases+ 2contact-matricespopulation-data

  R

  •

  Other

  •2•18•36•5•Updated Aug 26, 2024Aug 26, 2024

• traveltime

  Public
  R

  •

  Other

  •1•7•10•0•Updated Aug 16, 2024Aug 16, 2024

• syncomat

  Public
  Synthetically generated contact matrices for 200 countries using the R package conmat

  R

  •1•2•7•0•Updated Jul 23, 2024Jul 23, 2024

• idem-lab.r-universe.dev

  Public
  0•0•0•0•Updated May 31, 2024May 31, 2024

• conmat-paper

  Public
  Publication ideas for the conmat package

  0•0•0•0•Updated May 14, 2024May 14, 2024

• vector_sdm_course

  Public
  R

  •

  Creative Commons Attribution 4.0 International

  •3•0•2•0•Updated Apr 11, 2024Apr 11, 2024

• little-git-workshop

  Public
  0•0•0•0•Updated Feb 14, 2024Feb 14, 2024

• code-review

  Public
  Where we write notes and ideas for code review in the IDEM group

  1•0•2•0•Updated Feb 6, 2024Feb 6, 2024

• greta-dockerfiles

  Public
  Dockerfile

  •0•1•2•0•Updated Feb 6, 2024Feb 6, 2024

• sitassess-GPreff

  Public
  R

  •0•0•2•0•Updated Feb 2, 2024Feb 2, 2024

• vector_atlas_training_resources

  Public
  Hub for curated modelling & data training resources relevant to collaborators of the Vector Atlas.

  MIT License

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• .github

  Public
  1•0•0•0•Updated Jan 25, 2024Jan 25, 2024

• idem-lab.github.io

  Public
  0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

• demo-map-ir

  Public
  Extracting the demo parts of https://github.com/idem-lab/map-ir-gp-stack

  R

  •0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

• map-ir-gp-stack

  Public
  Reproducing and remixing the R code for running the model ensemble described in Hancock et al. (2020), Mapping Insecticide Resistance Phenotypes in African Malaria Vectors

  R

  •1•0•0•0•Updated Dec 8, 2023Dec 8, 2023

• neuts2efficacy

  Public
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission

  R

  •

  MIT License

  •4•0•0•0•Updated Dec 7, 2023Dec 7, 2023

• example-greta-targets

  Public
  example greta workflow using targets

  R

  •1•3•1•0•Updated Nov 17, 2023Nov 17, 2023

• targets-pkg-greta

  Public
  R

  •0•0•1•0•Updated Nov 14, 2023Nov 14, 2023

• intervals

  Public
  Estimating epi intervals from transmission pair data

  R

  •

  MIT License

  •3•0•0•0•Updated Dec 10, 2021Dec 10, 2021