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    28 repositories

    • llms-in-clinical-medicine-systematic-review

      Public
      The associated code and data for our systematic review of LLMs in clinical medicine.
      HTML
      •
      Other
      •0•1•0•0•Updated Nov 28, 2025Nov 28, 2025

    • tabpfn_in_nsgy

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Sep 28, 2025Sep 28, 2025

    • WEM-Cross-Batch-Attention

      Public
      Python
      •0•0•0•0•Updated Sep 8, 2025Sep 8, 2025

    • mci_depression_detection

      Public
      Scripts and Notebooks for MCI and Depression Detection
      Python
      •0•1•0•0•Updated Aug 22, 2025Aug 22, 2025

    • ICARE_score

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • MedG-KRP

      Public
      Public code repository for our paper "MedG-KRP: Medical Graph Knowledge Representation Probing." Presented at Machine Learning for Health in December, 2024.
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Jul 16, 2025Jul 16, 2025

    • Gateformer

      Public
      PyTorch implementation of Gateformer: Advancing Multivariate Time Series Forecasting through Temporal and Variate-Wise Attention with Gated Representations.
      Python
      •1•12•0•0•Updated May 2, 2025May 2, 2025

    • OmniBioTE

      Public
      Multimodal biosequence transformers of varying scale
      Python
      •
      Other
      •0•3•0•0•Updated Apr 4, 2025Apr 4, 2025

    • MedDistractQA

      Public
      Python
      •1•5•0•0•Updated Apr 2, 2025Apr 2, 2025

    • MooneyComputationModeling2024

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • llm-knowledge-graphs

      Public
      Code repository for our paper, "Medical Large Language Models are Vulnerable to Data Poisoning Attacks" (Nature Medicine, 2024).
      Python
      •
      GNU General Public License v3.0
      •3•10•0•0•Updated Jan 5, 2025Jan 5, 2025

    • MedMobile

      Public
      Python
      •0•6•0•0•Updated Oct 14, 2024Oct 14, 2024

    • genome_llama2

      Public
      An Autoregressive Foundation Model for Multi-Species Genomes Built on Top of Llama-2
      machine-learningbioinformaticsartificial-intelligencelarge-language-models
      Python
      •1•0•0•0•Updated Aug 24, 2024Aug 24, 2024

    • VIPER-torch

      Public
      dreamerv3 in pytorch
      Python
      •
      MIT License
      •1•6•2•1•Updated Mar 26, 2024Mar 26, 2024

    • long-range-arena-td

      Public
      Test top-down transformer's ability to do long range tasks
      Python
      •
      Apache License 2.0
      •85•0•0•0•Updated Dec 16, 2023Dec 16, 2023

    • Peds-Spine-Bibliometrics

      Public
      A Century of Evolution in Pediatric Spine Surgery Literature
      MIT License
      •0•0•0•0•Updated Aug 27, 2023Aug 27, 2023

    • NYUTron

      Public
      public code repository for paper "Health system scale language models are general purpose clinical prediction engines"
      Jupyter Notebook
      •
      Other
      •19•119•2•0•Updated Jul 28, 2023Jul 28, 2023

    • helmbenchmark

      Public
      Holistic Evaluation of Language Models (HELM), a framework to increase the transparency of language models (https://arxiv.org/abs/2211.09110).
      Python
      •
      Apache License 2.0
      •344•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • i2b2_2012_preprocessing

      Public
      public code repository for preprocessing i2b2 2012 dataset.
      Jupyter Notebook
      •
      MIT License
      •4•9•1•0•Updated Jun 29, 2023Jun 29, 2023

    • text2table

      Public
      Jupyter Notebook
      •
      MIT License
      •0•5•0•1•Updated May 4, 2023May 4, 2023

    • Model_Sensitivity

      Public
      Python
      •
      MIT License
      •1•3•0•0•Updated Nov 13, 2022Nov 13, 2022

    • TorchRDM

      Public archive
      Python
      •0•2•2•0•Updated Aug 16, 2022Aug 16, 2022

    • detectICH

      Public
      Detection of intracranial hemorrhage through Federated Learning
      Python
      •1•0•1•0•Updated May 29, 2022May 29, 2022

    • XltekDataReader

      Public archive
      Python
      •3•10•0•0•Updated Sep 14, 2021Sep 14, 2021

    • Cancer_Reinforcement_Learning

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 16, 2021Jun 16, 2021

    • nyuneurosurgery.github.io

      Public archive
      nyuneurosurgery's github site
      HTML
      •
      MIT License
      •2•0•0•0•Updated Apr 21, 2021Apr 21, 2021

    • deepmatch

      Public
      Sulaiman Somani's experiments for DeepMatch looking at using AEs to match patients as an alternative to linear propensity score estimations
      Jupyter Notebook
      •0•1•0•0•Updated Mar 30, 2021Mar 30, 2021

    • seeg_analysis

      Public
      SEEG analysis
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •3•0•0•0•Updated Dec 25, 2020Dec 25, 2020