Repositories list

• ome-resources-monitor

  Public
  BSD 2-Clause "Simplified" License

  •3•0•1•1•Updated Nov 30, 2025Nov 30, 2025

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•1•1•Updated Nov 30, 2025Nov 30, 2025

• prod-playbooks

  Public
  Playbooks used by the OME team for deploying production services including OMERO

  ansibledeploymentproduction+ 2omeroplaybooks

  Jinja

  •

  BSD 2-Clause "Simplified" License

  •18•4•11•0•Updated Nov 28, 2025Nov 28, 2025

• ansible-role-omero-searchengine

  Public
  Python

  •0•0•0•0•Updated Nov 28, 2025Nov 28, 2025

• omero-web-apps-examples

  Public template
  Example Setup for Web Apps

  Python

  •4•1•2•7•Updated Nov 28, 2025Nov 28, 2025

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1ome-zarr

  Python

  •

  Other

  •65•217•74•13•Updated Nov 28, 2025Nov 28, 2025

• ngff-spec

  Public
  (EXPERIMENTAL) Investigation of splitting NGFF specifications out of ome/ngff

  Python

  •4•9•2•4•Updated Nov 27, 2025Nov 27, 2025

• omero-marshal

  Public
  OMERO marshalling infrastructure

  modelmarshallingpip+ 1omero

  Python

  •

  GNU General Public License v2.0

  •11•5•3•3•Updated Nov 27, 2025Nov 27, 2025

• omero-biofilefinder

  Public
  OMERO.web plugin for opening data in BioFile Finder

  Python

  •

  GNU Affero General Public License v3.0

  •2•3•0•2•Updated Nov 26, 2025Nov 26, 2025

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 2omeroomero-py

  Python

  •

  GNU General Public License v2.0

  •35•27•56•11•Updated Nov 26, 2025Nov 26, 2025

• omero-build

  Public
  OMERO top-level build for all components

  buildomerometa-repo

  Dockerfile

  •7•1•3•3•Updated Nov 26, 2025Nov 26, 2025

• omero-scripts

  Public
  Core OMERO Scripts

  pythonscriptsomero

  Python

  •32•15•16•2•Updated Nov 26, 2025Nov 26, 2025

• omero-python-superbuild

  Public
  OMERO build for Python server components

  pythonbuildomero+ 1meta-repo

  4•0•1•4•Updated Nov 26, 2025Nov 26, 2025

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •26•6•15•3•Updated Nov 26, 2025Nov 26, 2025

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

  pythonjavaimage+ 3databaseserveromero

  Java

  •

  GNU General Public License v2.0

  •104•214•23•4•Updated Nov 25, 2025Nov 25, 2025

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2bioimagingfile-formats

  Python

  •

  Other

  •58•144•114•23•Updated Nov 25, 2025Nov 25, 2025

• omero-dropbox

  Public
  OMERO.dropbox server for watching directories

  pythoncomponentlib+ 2omeroomero-import

  Python

  •

  GNU General Public License v2.0

  •7•2•3•1•Updated Nov 25, 2025Nov 25, 2025

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5sdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •10•1•15•2•Updated Nov 25, 2025Nov 25, 2025

• omero-server-docker

  Public
  OMERO.server production docker image

  dockeromeroome+ 2openmicroscopyomero-server

  Shell

  •

  BSD 2-Clause "Simplified" License

  •31•16•11•7•Updated Nov 25, 2025Nov 25, 2025

• bio-formats-examples

  Public
  Examples of usage of the Bio-Formats API

  apigradlemaven+ 2examplesbio-formats

  Java

  •

  Other

  •19•13•0•0•Updated Nov 25, 2025Nov 25, 2025

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •36•19•68•6•Updated Nov 25, 2025Nov 25, 2025

• meeting-minutes

  Public
  Minutes from the weekly OME community meetings

  Creative Commons Attribution 4.0 International

  •6•0•1•0•Updated Nov 25, 2025Nov 25, 2025

• omero-web-docker

  Public
  OMERO.web production docker image

  dockeromeroome+ 2openmicroscopyomero-web

  Makefile

  •

  BSD 2-Clause "Simplified" License

  •21•7•13•7•Updated Nov 25, 2025Nov 25, 2025

• bioimage-latency-benchmark

  Public
  Jupyter Notebook

  •

  Other

  •10•8•6•4•Updated Nov 24, 2025Nov 24, 2025

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •6•4•3•3•Updated Nov 24, 2025Nov 24, 2025

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •4•2•1•2•Updated Nov 24, 2025Nov 24, 2025

• omero-cli-zarr

  Public
  omerozarrngff+ 1ome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •10•18•19•11•Updated Nov 24, 2025Nov 24, 2025

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1ngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •24•42•28•6•Updated Nov 24, 2025Nov 24, 2025

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2webomero

  Python

  •36•22•136•15•Updated Nov 24, 2025Nov 24, 2025

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •19•8•4•0•Updated Nov 21, 2025Nov 21, 2025