Repositories list

• openMINDS_MATLAB

  Public
  A MATLAB toolbox for generating openMINDS-compliant linked metadata.

  metadatalinked-dataneuroscience+ 3targetopenmindsprogramming-package

  MATLAB

  •

  MIT License

  •3•4•11•0•Updated Oct 15, 2025Oct 15, 2025

• openMINDS_Python

  Public
  Python package for the openMINDS metadata models. The package contains all openMINDS schemas as Python classes in addition to schema base classes and utility methods.

  toolingtargetopenminds+ 1programming-package

  Python

  •

  MIT License

  •3•2•19•4•Updated Oct 10, 2025Oct 10, 2025

• openMINDS_documentation

  Public
  Read-The-Docs documentation for the openMINDS metadata framework.

  documentationtargetopenminds

  MIT License

  •4•0•26•4•Updated Oct 10, 2025Oct 10, 2025

• openMINDS_instances

  Public
  Well defined metadata instances for selected schemas of the openMINDS metadata models.

  openmindsinstance-libraries

  Python

  •

  MIT License

  •15•3•83•46•Updated Oct 10, 2025Oct 10, 2025

• openMINDS_JSON-Schema

  Public
  Complete collection of schemas for the metadata models of the openMINDS metadata framework. All schemas are formatted in JSON-Schema (*.schema.json).

  targetschema-formatopenminds

  MIT License

  •2•0•2•1•Updated Oct 10, 2025Oct 10, 2025

• openMINDS

  Public
  Complete collection of schemas for the metadata models of the openMINDS metadata framework. All schemas are formatted in the openMINDS syntax (*.schema.omi.json).

  openmindsmetadata-model

  MIT License

  •3•2•11•1•Updated Oct 9, 2025Oct 9, 2025

• openMINDS_controlledTerms

  Public
  Metadata model for the consistent registration of well-defined terms as well as a corresponding library of terminologies (including links to ontological terms where applicable).

  openmindsschema-module

  MIT License

  •12•7•9•0•Updated Oct 9, 2025Oct 9, 2025

• openMINDS_computation

  Public
  A metadata model for simulation, data analysis and visualization provenance in neuroscience

  openmindsschema-module

  MIT License

  •4•0•0•1•Updated Sep 29, 2025Sep 29, 2025

• openMINDS_publications

  Public
  A metadata model for scholarly publications in neuroscience, including live papers

  openmindsschema-module

  MIT License

  •2•0•2•0•Updated Sep 21, 2025Sep 21, 2025

• openMINDS_neuroimaging

  Public
  A metadata model for MRI experiments; an openMINDS extension

  openmindsschema-module

  MIT License

  •2•1•2•1•Updated Aug 21, 2025Aug 21, 2025

• openMINDS_core

  Public
  The openMINDS core metadata model includes schemas that can be used to describe the general origin, location and content of research products.

  openmindsschema-module

  MIT License

  •19•23•35•5•Updated Aug 20, 2025Aug 20, 2025

• openMINDS_stimulation

  Public
  A metadata model capturing in-depth descriptions of stimuli and stimulation protocols in neuroscience.

  openmindsschema-module

  MIT License

  •3•1•1•1•Updated Aug 1, 2025Aug 1, 2025

• openMINDS_chemicals

  Public
  A metadata model for capturing in-depth descriptions of chemical substances and mixtures.

  openmindsschema-module

  MIT License

  •2•2•2•1•Updated Jul 23, 2025Jul 23, 2025

• openMINDS_actions

  Public
  CI/CD pipelines for openMINDS repositories using GitHub Actions.

  toolingutilsopenminds

  Python

  •

  MIT License

  •1•0•3•1•Updated Jun 26, 2025Jun 26, 2025

• bids2openminds

  Public
  A tool to generate openMINDS metadata from BIDS datasets

  converteropenminds

  Python

  •

  MIT License

  •6•5•18•6•Updated Jun 6, 2025Jun 6, 2025

• openMINDS_LinkML

  Public
  Complete collection of schemas for the metadata models of the openMINDS metadata framework. All schemas are formatted in LinkML (*.yaml).

  targetschema-formatopenminds

  MIT License

  •1•1•1•0•Updated May 28, 2025May 28, 2025

• openMINDS_specimenPrep

  Public
  A metadata model capturing in-depth descriptions of specimen preparations.

  openmindsschema-module

  MIT License

  •2•1•0•1•Updated May 28, 2025May 28, 2025

• openMINDS_SANDS

  Public
  A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.

  openmindsschema-module

  Python

  •

  MIT License

  •11•13•11•1•Updated May 28, 2025May 28, 2025

• openMINDS_ephys

  Public
  A metadata model for capturing in-depth descriptions of electrophysiology experiments.

  openmindsschema-module

  MIT License

  •6•6•0•0•Updated May 28, 2025May 28, 2025

• openMINDS_Java

  Public
  A Java library for openMINDS

  targetopenmindsprogramming-package

  Java

  •1•0•0•1•Updated Apr 4, 2025Apr 4, 2025

• openMINDS_OWL

  Public
  Complete collection of schemas for the metadata models of the openMINDS metadata framework. All schemas are expressed in OWL and available in multiple syntaxes.

  targetschema-formatopenminds

  MIT License

  •1•0•0•2•Updated Jan 24, 2025Jan 24, 2025

• .github

  Public
  README repository for openMetadataInitiative organization.

  0•0•0•0•Updated Sep 23, 2024Sep 23, 2024