Skip to content

@usadellab usadellab

Change the repository type filter

All

    Repositories list

    19 repositories

    • untwistApp

      Public
      A tool for visualization of phenotypic data, GWAS analysis and some Bioinformatics tools
      JavaScript
      •
      GNU General Public License v3.0
      •0•1•11•0•Updated Oct 17, 2024Oct 17, 2024

    • maDMP_exchange_RDMO_hackathon

      Public
      0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • MARS-ARC2Repo

      Public
      MARS-ARC2Repo is an implementation of Multi-omics Adapter for Repository Submissions (MARS) in IBG-4
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•4•0•Updated Sep 9, 2024Sep 9, 2024

    • mars

      Public
      Project code for BioHackathon Europe 2023.
      Java
      •26•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • prot-scriber

      Public
      Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).
      bioinformaticsgenomicsgene-familiesprotein-function-predictionblastxblastpbiological-sequence-analysis
      Rust
      •
      GNU General Public License v3.0
      •5•7•1•1•Updated Aug 14, 2024Aug 14, 2024

    • Trimmomatic

      Public
      Java
      •
      Other
      •71•220•38•7•Updated May 30, 2024May 30, 2024

    • sfb1535_MibiNet_DB

      Public
      0•0•0•0•Updated May 28, 2024May 28, 2024

    • usadellab.github.io

      Public
      JavaScript
      •7•4•4•0•Updated Apr 27, 2023Apr 27, 2023

    • course

      Public
      0•0•0•0•Updated Mar 12, 2023Mar 12, 2023

    • GeneExpressionPlots

      Public
      A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype).
      TypeScript
      •
      GNU General Public License v3.0
      •4•6•12•13•Updated Mar 5, 2023Mar 5, 2023

    • gfftk

      Public
      GFF toolkit to work with GFF files
      C++
      •
      GNU General Public License v3.0
      •0•2•3•0•Updated Sep 21, 2022Sep 21, 2022

    • Teaching

      Public
      Just getting started with assembly and RNA
      0•0•0•0•Updated Sep 15, 2021Sep 15, 2021

    • Gene-Expression-Plotter-EOSC-Life-Demonstrator

      Public
      A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype). This project integrates data from 'fairdomhub'.
      JavaScript
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 19, 2021Jan 19, 2021

    • physiospace_shiny

      Public
      A Rmarkdown shiny front-end to github.com/JRC-COMBINE/PhysioSpaceMethods
      R
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Dec 11, 2020Dec 11, 2020

    • EMPHASIS-Layer

      Public
      Perl
      •
      GNU General Public License v3.0
      •0•0•4•0•Updated Nov 30, 2020Nov 30, 2020

    • Robina

      Public
      This is Robina Arcas featuring Isoform and in the future single cell analysis. Uses Kallisto
      Java
      •0•0•0•0•Updated Feb 19, 2019Feb 19, 2019

    • MapMan-Mercator-4

      Public
      To reprorduce figures etc
      R
      •1•0•0•0•Updated Dec 13, 2018Dec 13, 2018

    • MapMan2GO

      Public
      Maps MapMan-Bins to compound Gene Ontology Term Annotations (GOA).
      R
      •
      GNU General Public License v3.0
      •3•4•0•0•Updated Dec 12, 2018Dec 12, 2018

    • PhysioSpaceMethods

      Public
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 6, 2018Jul 6, 2018