diff --git a/.automation/generated/linter-helps.json b/.automation/generated/linter-helps.json index 9d5b72e7e9c..20e7b5eb4e9 100644 --- a/.automation/generated/linter-helps.json +++ b/.automation/generated/linter-helps.json @@ -3453,7 +3453,7 @@ " completion Generate autocompletion script", " config Handle cached configurations", " delete Delete configurations in Kubescape SaaS version", - " download Download attack-tracks,controls-inputs,exceptions,control,framework,artifacts", + " download Download control,framework,artifacts,attack-tracks,controls-inputs,exceptions", " fix Fix misconfiguration in files", " help Help about any command", " list List frameworks/controls will list the supported frameworks and controls", @@ -3500,7 +3500,7 @@ " --version version for kubeval" ], "lightning-flow-scanner": [ - "(node:1745) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", + "(node:1746) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", "(Use `node --trace-deprecation ...` to show where the warning was created)", "Find and fix potential bugs in Salesforce flows.", "", @@ -3927,7 +3927,7 @@ " Print version" ], "markdown-link-check": [ - "(node:1523) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", + "(node:1524) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", "(Use `node --trace-deprecation ...` to show where the warning was created)", "Usage: markdown-link-check [options] [filenamesOrUrls...]", "", @@ -8038,7 +8038,7 @@ "@typescript-eslint/unbound-method typescript Best Practices Best Practices eslint-typescript" ], "sfdx-scanner-apex": [ - "(node:1757) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", + "(node:1758) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", "(Use `node --trace-deprecation ...` to show where the warning was created)", "Scan a codebase with all the rules in the registry, or use parameters to filter the rules based on rulename, category, or ruleset.", "", @@ -8093,7 +8093,7 @@ "COMMANDS", " scanner run dfa Scan codebase with all DFA rules by default.", "", - "(node:1769) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", + "(node:1770) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", "(Use `node --trace-deprecation ...` to show where the warning was created)", "Warning: We're continually improving Salesforce Code Analyzer. Tell us what you think! Give feedback at https://research.net/r/SalesforceCA", " name languages categories rulesets [dep] engine is dfa is pilot", @@ -8314,7 +8314,7 @@ " UnimplementedTypeRule apex Performance sfge N N" ], "sfdx-scanner-aura": [ - "(node:1951) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", + "(node:1948) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", "(Use `node --trace-deprecation ...` to show where the warning was created)", "Scan a codebase with all the rules in the registry, or use parameters to filter the rules based on rulename, category, or ruleset.", "", @@ -8369,7 +8369,7 @@ "COMMANDS", " scanner run dfa Scan codebase with all DFA rules by default.", "", - "(node:1963) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", + "(node:1960) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", "(Use `node --trace-deprecation ...` to show where the warning was created)", "Warning: We're continually improving Salesforce Code Analyzer. Tell us what you think! Give feedback at https://research.net/r/SalesforceCA", " name languages categories rulesets [dep] engine is dfa is pilot", @@ -8590,7 +8590,7 @@ " UnimplementedTypeRule apex Performance sfge N N" ], "sfdx-scanner-lwc": [ - "(node:2145) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", + "(node:2138) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", "(Use `node --trace-deprecation ...` to show where the warning was created)", "Scan a codebase with all the rules in the registry, or use parameters to filter the rules based on rulename, category, or ruleset.", "", @@ -8645,7 +8645,7 @@ "COMMANDS", " scanner run dfa Scan codebase with all DFA rules by default.", "", - "(node:2157) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", + "(node:2150) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead.", "(Use `node --trace-deprecation ...` to show where the warning was created)", "Warning: We're continually improving Salesforce Code Analyzer. Tell us what you think! Give feedback at https://research.net/r/SalesforceCA", " name languages categories rulesets [dep] engine is dfa is pilot", @@ -9006,7 +9006,7 @@ " [--d3dag] [--summary] [--detailed-summary] [--archive FILE]", " [--cleanup-metadata FILE [FILE ...]] [--cleanup-shadow]", " [--skip-script-cleanup] [--unlock]", - " [--list-changes {code,input,params}] [--list-input-changes]", + " [--list-changes {input,code,params}] [--list-input-changes]", " [--list-params-changes] [--list-untracked]", " [--delete-all-output | --delete-temp-output]", " [--keep-incomplete] [--drop-metadata] [--version]", @@ -9050,7 +9050,7 @@ " [--scheduler-solver-path SCHEDULER_SOLVER_PATH]", " [--deploy-sources QUERY CHECKSUM]", " [--target-jobs TARGET_JOBS [TARGET_JOBS ...]]", - " [--mode {remote,subprocess,default}]", + " [--mode {subprocess,remote,default}]", " [--report-html-path VALUE]", " [--report-html-stylesheet-path VALUE]", " [targets ...]", @@ -9508,7 +9508,7 @@ " (default: False)", " --unlock Remove a lock on the working directory. (default:", " False)", - " --list-changes {code,input,params}, --lc {code,input,params}", + " --list-changes {input,code,params}, --lc {input,code,params}", " List all output files for which the given items (code,", " input, params) have changed since creation.", " --list-input-changes, --li", @@ -9859,7 +9859,7 @@ " --target-jobs TARGET_JOBS [TARGET_JOBS ...]", " Internal use only: Target particular jobs by", " RULE:WILDCARD1=VALUE,WILDCARD2=VALUE,...", - " --mode {remote,subprocess,default}", + " --mode {subprocess,remote,default}", " Internal use only: Set execution mode of Snakemake.", " (default: default)", "", diff --git a/.automation/generated/linter-versions.json b/.automation/generated/linter-versions.json index b5e0b5a549c..6f20c1dc3e2 100644 --- a/.automation/generated/linter-versions.json +++ b/.automation/generated/linter-versions.json @@ -33,7 +33,7 @@ "flake8": "7.1.1", "gherkin-lint": "0.0.0", "git_diff": "2.45.2", - "gitleaks": "8.19.0", + "gitleaks": "8.19.1", "golangci-lint": "1.61.0", "goodcheck": "3.1.0", "graphql-schema-linter": "3.0.1", diff --git a/CHANGELOG.md b/CHANGELOG.md index dbe720ab524..e7ada5d43ee 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -123,6 +123,7 @@ Note: Can be used with `oxsecurity/megalinter@beta` in your GitHub Action mega-l - [ruff](https://github.com/astral-sh/ruff) from 0.6.4 to **0.6.5** on 2024-09-13 - [gitleaks](https://github.com/gitleaks/gitleaks) from 8.18.4 to **8.19.0** on 2024-09-14 - [trufflehog](https://github.com/trufflesecurity/trufflehog) from 3.82.1 to **3.82.2** on 2024-09-14 + - [gitleaks](https://github.com/gitleaks/gitleaks) from 8.19.0 to **8.19.1** on 2024-09-14 ## [v8.0.0] - 2024-08-19 diff --git a/docs/all_linters.md b/docs/all_linters.md index 62787853bfb..409004be0d3 100644 --- a/docs/all_linters.md +++ b/docs/all_linters.md @@ -38,7 +38,7 @@ | [**flake8**](https://github.com/PyCQA/flake8){target=_blank} | 7.1.1 | [MIT](licenses/flake8.md) | [![GitHub stars](https://img.shields.io/github/stars/PyCQA/flake8?cacheSeconds=3600)](https://github.com/PyCQA/flake8){target=_blank} | [PYTHON](descriptors/python_flake8.md) | :white_circle: | [Repository](https://github.com/PyCQA/flake8){target=_blank} | | [**gherkin-lint**](https://github.com/vsiakka/gherkin-lint){target=_blank} | N/A | [ISC](licenses/gherkin-lint.md) | [![GitHub stars](https://img.shields.io/github/stars/vsiakka/gherkin-lint?cacheSeconds=3600)](https://github.com/vsiakka/gherkin-lint){target=_blank} | [GHERKIN](descriptors/gherkin_gherkin_lint.md) | :white_circle: | [Repository](https://github.com/vsiakka/gherkin-lint){target=_blank} | | [**git_diff**](https://github.com/git/git){target=_blank} | 2.45.2 | [LGPL-2.1](licenses/git_diff.md) | [![GitHub stars](https://img.shields.io/github/stars/git/git?cacheSeconds=3600)](https://github.com/git/git){target=_blank} | [REPOSITORY](descriptors/repository_git_diff.md) | | [Repository](https://github.com/git/git){target=_blank} | -| [**gitleaks**](https://github.com/gitleaks/gitleaks){target=_blank} | 8.19.0 | [MIT](licenses/gitleaks.md) | [![GitHub stars](https://img.shields.io/github/stars/gitleaks/gitleaks?cacheSeconds=3600)](https://github.com/gitleaks/gitleaks){target=_blank} | [REPOSITORY](descriptors/repository_gitleaks.md) | :white_circle: | [Repository](https://github.com/gitleaks/gitleaks){target=_blank} | +| [**gitleaks**](https://github.com/gitleaks/gitleaks){target=_blank} | 8.19.1 | [MIT](licenses/gitleaks.md) | [![GitHub stars](https://img.shields.io/github/stars/gitleaks/gitleaks?cacheSeconds=3600)](https://github.com/gitleaks/gitleaks){target=_blank} | [REPOSITORY](descriptors/repository_gitleaks.md) | :white_circle: | [Repository](https://github.com/gitleaks/gitleaks){target=_blank} | | [**golangci-lint**](https://github.com/golangci/golangci-lint){target=_blank} | 1.61.0 | [GPL-3.0](licenses/golangci-lint.md) | [![GitHub stars](https://img.shields.io/github/stars/golangci/golangci-lint?cacheSeconds=3600)](https://github.com/golangci/golangci-lint){target=_blank} | [GO](descriptors/go_golangci_lint.md) | :white_circle: | [Repository](https://github.com/golangci/golangci-lint){target=_blank} | | [**graphql-schema-linter**](https://github.com/cjoudrey/graphql-schema-linter){target=_blank} | 3.0.1 | [MIT](licenses/graphql-schema-linter.md) | [![GitHub stars](https://img.shields.io/github/stars/cjoudrey/graphql-schema-linter?cacheSeconds=3600)](https://github.com/cjoudrey/graphql-schema-linter){target=_blank} | [GRAPHQL](descriptors/graphql_graphql_schema_linter.md) | :hammer_and_wrench: | [Pull Request](https://github.com/cjoudrey/graphql-schema-linter/pull/272){target=_blank} | | [**grype**](https://github.com/anchore/grype){target=_blank} | 0.79.5 | [Apache-2.0](licenses/grype.md) | [![GitHub stars](https://img.shields.io/github/stars/anchore/grype?cacheSeconds=3600)](https://github.com/anchore/grype){target=_blank} | [REPOSITORY](descriptors/repository_grype.md) | :white_circle: | [Repository](https://github.com/anchore/grype){target=_blank} | diff --git a/docs/config-precommands.md b/docs/config-precommands.md index e3981f6da9e..f62ee43905a 100644 --- a/docs/config-precommands.md +++ b/docs/config-precommands.md @@ -30,5 +30,15 @@ PRE_COMMANDS: tag: before_plugins # Tag indicating that the command will be run before loading plugins ``` +| Property | Description | Default value | +|------------------------|------------------------------------------------------------------------------------------------------------------------------------------|---------------| +| **command** | Command line to run | Mandatory | +| **cwd** | Directory where to run the command (`workspace` or `root`) | `workspace` | +| **secured_env** | Apply filtering of secured env variables before calling the command (default true)
Be careful if you disable it ! | `true` | +| **continue_if_failed** | If set to `false`, stop MegaLinter process in case of command failure | `true` | +| **venv** | If set, runs the command into the related python venv | | +| **output_variables** | ENV variables to get from output after running the commands, and store in MegaLinter ENV context, so they can be reused in next commands | `[]` | +| **tag** | Tag defining at which commands entry point the command will be run (available tags: `before_plugins`) | | + diff --git a/docs/descriptors/kubernetes_kubescape.md b/docs/descriptors/kubernetes_kubescape.md index be097cb912f..5362c70eb4f 100644 --- a/docs/descriptors/kubernetes_kubescape.md +++ b/docs/descriptors/kubernetes_kubescape.md @@ -126,7 +126,7 @@ Available Commands: completion Generate autocompletion script config Handle cached configurations delete Delete configurations in Kubescape SaaS version - download Download attack-tracks,controls-inputs,exceptions,control,framework,artifacts + download Download control,framework,artifacts,attack-tracks,controls-inputs,exceptions fix Fix misconfiguration in files help Help about any command list List frameworks/controls will list the supported frameworks and controls diff --git a/docs/descriptors/markdown_markdown_link_check.md b/docs/descriptors/markdown_markdown_link_check.md index 3730f0bc123..6af463be724 100644 --- a/docs/descriptors/markdown_markdown_link_check.md +++ b/docs/descriptors/markdown_markdown_link_check.md @@ -89,7 +89,7 @@ markdown-link-check -c .markdown-link-check.json myfile.md ### Help content ```shell -(node:1523) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. +(node:1524) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. (Use `node --trace-deprecation ...` to show where the warning was created) Usage: markdown-link-check [options] [filenamesOrUrls...] diff --git a/docs/descriptors/repository_gitleaks.md b/docs/descriptors/repository_gitleaks.md index cfa0d294549..b9310dbc2c5 100644 --- a/docs/descriptors/repository_gitleaks.md +++ b/docs/descriptors/repository_gitleaks.md @@ -51,7 +51,7 @@ git fetch --depth=0 ## gitleaks documentation -- Version in MegaLinter: **8.19.0** +- Version in MegaLinter: **8.19.1** - Visit [Official Web Site](https://github.com/gitleaks/gitleaks#readme){target=_blank} - See [How to configure gitleaks rules](https://github.com/gitleaks/gitleaks#configuration){target=_blank} - If custom `.gitleaks.toml` config file isn't found, [.gitleaks.toml](https://github.com/oxsecurity/megalinter/tree/main/TEMPLATES/.gitleaks.toml){target=_blank} will be used @@ -179,7 +179,7 @@ Use "gitleaks [command] --help" for more information about a command. - Dockerfile commands : ```dockerfile # renovate: datasource=docker depName=zricethezav/gitleaks -ARG REPOSITORY_GITLEAKS_VERSION=v8.19.0 +ARG REPOSITORY_GITLEAKS_VERSION=v8.19.1 FROM zricethezav/gitleaks:${REPOSITORY_GITLEAKS_VERSION} AS gitleaks COPY --link --from=gitleaks /usr/bin/gitleaks /usr/bin/ ``` diff --git a/docs/descriptors/salesforce.md b/docs/descriptors/salesforce.md index 6d3a9f7963a..456a12dae8d 100644 --- a/docs/descriptors/salesforce.md +++ b/docs/descriptors/salesforce.md @@ -37,7 +37,7 @@ description: sfdx-scanner-apex, sfdx-scanner-aura, sfdx-scanner-lwc, lightning-f # renovate: datasource=npm depName=@salesforce/cli ARG SALESFORCE_CLI_VERSION=2.58.7 # renovate: datasource=npm depName=@salesforce/plugin-packaging -ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.5 +ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.6 # renovate: datasource=npm depName=sfdx-hardis ARG SFDX_HARDIS_VERSION=4.53.0 ENV JAVA_HOME=/usr/lib/jvm/java-21-openjdk diff --git a/docs/descriptors/salesforce_lightning_flow_scanner.md b/docs/descriptors/salesforce_lightning_flow_scanner.md index 49a2ee019d6..b12ac5ca0b2 100644 --- a/docs/descriptors/salesforce_lightning_flow_scanner.md +++ b/docs/descriptors/salesforce_lightning_flow_scanner.md @@ -90,7 +90,7 @@ sf flow:scan ### Help content ```shell -(node:1745) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. +(node:1746) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. (Use `node --trace-deprecation ...` to show where the warning was created) Find and fix potential bugs in Salesforce flows. @@ -126,7 +126,7 @@ GLOBAL FLAGS # renovate: datasource=npm depName=@salesforce/cli ARG SALESFORCE_CLI_VERSION=2.58.7 # renovate: datasource=npm depName=@salesforce/plugin-packaging -ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.5 +ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.6 # renovate: datasource=npm depName=sfdx-hardis ARG SFDX_HARDIS_VERSION=4.53.0 ENV JAVA_HOME=/usr/lib/jvm/java-21-openjdk diff --git a/docs/descriptors/salesforce_sfdx_scanner_apex.md b/docs/descriptors/salesforce_sfdx_scanner_apex.md index 7ef4a4728f9..a243955bd0c 100644 --- a/docs/descriptors/salesforce_sfdx_scanner_apex.md +++ b/docs/descriptors/salesforce_sfdx_scanner_apex.md @@ -94,7 +94,7 @@ sf scanner:run ### Help content ```shell -(node:1757) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. +(node:1758) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. (Use `node --trace-deprecation ...` to show where the warning was created) Scan a codebase with all the rules in the registry, or use parameters to filter the rules based on rulename, category, or ruleset. @@ -149,7 +149,7 @@ GLOBAL FLAGS COMMANDS scanner run dfa Scan codebase with all DFA rules by default. -(node:1769) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. +(node:1770) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. (Use `node --trace-deprecation ...` to show where the warning was created) Warning: We're continually improving Salesforce Code Analyzer. Tell us what you think! Give feedback at https://research.net/r/SalesforceCA name languages categories rulesets [dep] engine is dfa is pilot @@ -378,7 +378,7 @@ Warning: We're continually improving Salesforce Code Analyzer. Tell us what you # renovate: datasource=npm depName=@salesforce/cli ARG SALESFORCE_CLI_VERSION=2.58.7 # renovate: datasource=npm depName=@salesforce/plugin-packaging -ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.5 +ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.6 # renovate: datasource=npm depName=sfdx-hardis ARG SFDX_HARDIS_VERSION=4.53.0 ENV JAVA_HOME=/usr/lib/jvm/java-21-openjdk diff --git a/docs/descriptors/salesforce_sfdx_scanner_aura.md b/docs/descriptors/salesforce_sfdx_scanner_aura.md index 3b68c670eee..2e783cf7d27 100644 --- a/docs/descriptors/salesforce_sfdx_scanner_aura.md +++ b/docs/descriptors/salesforce_sfdx_scanner_aura.md @@ -90,7 +90,7 @@ sf scanner:run ### Help content ```shell -(node:1951) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. +(node:1948) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. (Use `node --trace-deprecation ...` to show where the warning was created) Scan a codebase with all the rules in the registry, or use parameters to filter the rules based on rulename, category, or ruleset. @@ -145,7 +145,7 @@ GLOBAL FLAGS COMMANDS scanner run dfa Scan codebase with all DFA rules by default. -(node:1963) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. +(node:1960) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. (Use `node --trace-deprecation ...` to show where the warning was created) Warning: We're continually improving Salesforce Code Analyzer. Tell us what you think! Give feedback at https://research.net/r/SalesforceCA name languages categories rulesets [dep] engine is dfa is pilot @@ -374,7 +374,7 @@ Warning: We're continually improving Salesforce Code Analyzer. Tell us what you # renovate: datasource=npm depName=@salesforce/cli ARG SALESFORCE_CLI_VERSION=2.58.7 # renovate: datasource=npm depName=@salesforce/plugin-packaging -ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.5 +ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.6 # renovate: datasource=npm depName=sfdx-hardis ARG SFDX_HARDIS_VERSION=4.53.0 ENV JAVA_HOME=/usr/lib/jvm/java-21-openjdk diff --git a/docs/descriptors/salesforce_sfdx_scanner_lwc.md b/docs/descriptors/salesforce_sfdx_scanner_lwc.md index 173812af7a4..dd4e6ade047 100644 --- a/docs/descriptors/salesforce_sfdx_scanner_lwc.md +++ b/docs/descriptors/salesforce_sfdx_scanner_lwc.md @@ -90,7 +90,7 @@ sf scanner:run ### Help content ```shell -(node:2145) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. +(node:2138) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. (Use `node --trace-deprecation ...` to show where the warning was created) Scan a codebase with all the rules in the registry, or use parameters to filter the rules based on rulename, category, or ruleset. @@ -145,7 +145,7 @@ GLOBAL FLAGS COMMANDS scanner run dfa Scan codebase with all DFA rules by default. -(node:2157) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. +(node:2150) [DEP0040] DeprecationWarning: The `punycode` module is deprecated. Please use a userland alternative instead. (Use `node --trace-deprecation ...` to show where the warning was created) Warning: We're continually improving Salesforce Code Analyzer. Tell us what you think! Give feedback at https://research.net/r/SalesforceCA name languages categories rulesets [dep] engine is dfa is pilot @@ -374,7 +374,7 @@ Warning: We're continually improving Salesforce Code Analyzer. Tell us what you # renovate: datasource=npm depName=@salesforce/cli ARG SALESFORCE_CLI_VERSION=2.58.7 # renovate: datasource=npm depName=@salesforce/plugin-packaging -ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.5 +ARG SALESFORCE_PLUGIN_PACKAGING_VERSION=2.8.6 # renovate: datasource=npm depName=sfdx-hardis ARG SFDX_HARDIS_VERSION=4.53.0 ENV JAVA_HOME=/usr/lib/jvm/java-21-openjdk diff --git a/docs/descriptors/snakemake_snakemake.md b/docs/descriptors/snakemake_snakemake.md index af69d5715bf..ac46de65030 100644 --- a/docs/descriptors/snakemake_snakemake.md +++ b/docs/descriptors/snakemake_snakemake.md @@ -132,7 +132,7 @@ usage: snakemake [-h] [--dry-run] [--profile PROFILE] [--d3dag] [--summary] [--detailed-summary] [--archive FILE] [--cleanup-metadata FILE [FILE ...]] [--cleanup-shadow] [--skip-script-cleanup] [--unlock] - [--list-changes {code,input,params}] [--list-input-changes] + [--list-changes {input,code,params}] [--list-input-changes] [--list-params-changes] [--list-untracked] [--delete-all-output | --delete-temp-output] [--keep-incomplete] [--drop-metadata] [--version] @@ -176,7 +176,7 @@ usage: snakemake [-h] [--dry-run] [--profile PROFILE] [--scheduler-solver-path SCHEDULER_SOLVER_PATH] [--deploy-sources QUERY CHECKSUM] [--target-jobs TARGET_JOBS [TARGET_JOBS ...]] - [--mode {remote,subprocess,default}] + [--mode {subprocess,remote,default}] [--report-html-path VALUE] [--report-html-stylesheet-path VALUE] [targets ...] @@ -634,7 +634,7 @@ UTILITIES: (default: False) --unlock Remove a lock on the working directory. (default: False) - --list-changes {code,input,params}, --lc {code,input,params} + --list-changes {input,code,params}, --lc {input,code,params} List all output files for which the given items (code, input, params) have changed since creation. --list-input-changes, --li @@ -985,7 +985,7 @@ INTERNAL: --target-jobs TARGET_JOBS [TARGET_JOBS ...] Internal use only: Target particular jobs by RULE:WILDCARD1=VALUE,WILDCARD2=VALUE,... - --mode {remote,subprocess,default} + --mode {subprocess,remote,default} Internal use only: Set execution mode of Snakemake. (default: default) diff --git a/docs/used-by-stats.md b/docs/used-by-stats.md index 2547362859b..8a812291969 100644 --- a/docs/used-by-stats.md +++ b/docs/used-by-stats.md @@ -3,19 +3,19 @@ [![Generated by github-dependents-info](https://img.shields.io/static/v1?label=Used%20by&message=2650&color=informational&logo=slickpic)](https://github.com/oxsecurity/megalinter/network/dependents) [![Generated by github-dependents-info](https://img.shields.io/static/v1?label=Used%20by%20(public)&message=2650&color=informational&logo=slickpic)](https://github.com/oxsecurity/megalinter/network/dependents) [![Generated by github-dependents-info](https://img.shields.io/static/v1?label=Used%20by%20(private)&message=-2650&color=informational&logo=slickpic)](https://github.com/oxsecurity/megalinter/network/dependents) -[![Generated by github-dependents-info](https://img.shields.io/static/v1?label=Used%20by%20(stars)&message=94953&color=informational&logo=slickpic)](https://github.com/oxsecurity/megalinter/network/dependents) +[![Generated by github-dependents-info](https://img.shields.io/static/v1?label=Used%20by%20(stars)&message=94964&color=informational&logo=slickpic)](https://github.com/oxsecurity/megalinter/network/dependents) | Repository | Stars | |:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------:| -|   [nektos](https://github.com/nektos) / [act](https://github.com/nektos/act) | 53892 | -|   [PRQL](https://github.com/PRQL) / [prql](https://github.com/PRQL/prql) | 9798 | -|   [dorssel](https://github.com/dorssel) / [usbipd-win](https://github.com/dorssel/usbipd-win) | 3516 | +|   [nektos](https://github.com/nektos) / [act](https://github.com/nektos/act) | 53901 | +|   [PRQL](https://github.com/PRQL) / [prql](https://github.com/PRQL/prql) | 9799 | +|   [dorssel](https://github.com/dorssel) / [usbipd-win](https://github.com/dorssel/usbipd-win) | 3517 | |   [IlanCosman](https://github.com/IlanCosman) / [tide](https://github.com/IlanCosman/tide) | 2874 | |   [stepancheg](https://github.com/stepancheg) / [rust-protobuf](https://github.com/stepancheg/rust-protobuf) | 2765 | |   [privacyguides](https://github.com/privacyguides) / [privacyguides.org](https://github.com/privacyguides/privacyguides.org) | 2687 | |   [PowerDNS-Admin](https://github.com/PowerDNS-Admin) / [PowerDNS-Admin](https://github.com/PowerDNS-Admin/PowerDNS-Admin) | 2431 | |   [microsoft](https://github.com/microsoft) / [code-with-engineering-playbook](https://github.com/microsoft/code-with-engineering-playbook) | 2216 | -|   [ever-co](https://github.com/ever-co) / [ever-gauzy](https://github.com/ever-co/ever-gauzy) | 2199 | +|   [ever-co](https://github.com/ever-co) / [ever-gauzy](https://github.com/ever-co/ever-gauzy) | 2200 | |   [oxsecurity](https://github.com/oxsecurity) / [megalinter](https://github.com/oxsecurity/megalinter) | 1886 | |   [meichthys](https://github.com/meichthys) / [foss_photo_libraries](https://github.com/meichthys/foss_photo_libraries) | 1769 | |   [cisagov](https://github.com/cisagov) / [ScubaGear](https://github.com/cisagov/ScubaGear) | 1577 | @@ -23,7 +23,7 @@ |   [unixorn](https://github.com/unixorn) / [git-extra-commands](https://github.com/unixorn/git-extra-commands) | 1002 | |   [TrimarcJake](https://github.com/TrimarcJake) / [Locksmith](https://github.com/TrimarcJake/Locksmith) | 799 | |   [unixorn](https://github.com/unixorn) / [zsh-quickstart-kit](https://github.com/unixorn/zsh-quickstart-kit) | 775 | -|   [secureCodeBox](https://github.com/secureCodeBox) / [secureCodeBox](https://github.com/secureCodeBox/secureCodeBox) | 766 | +|   [secureCodeBox](https://github.com/secureCodeBox) / [secureCodeBox](https://github.com/secureCodeBox/secureCodeBox) | 767 | |   [ministryofjustice](https://github.com/ministryofjustice) / [modernisation-platform](https://github.com/ministryofjustice/modernisation-platform) | 680 | |   [awslabs](https://github.com/awslabs) / [aws-deployment-framework](https://github.com/awslabs/aws-deployment-framework) | 656 | |   [cattle-ops](https://github.com/cattle-ops) / [terraform-aws-gitlab-runner](https://github.com/cattle-ops/terraform-aws-gitlab-runner) | 577 | @@ -63,7 +63,7 @@ |   [davidB](https://github.com/davidB) / [tracing-opentelemetry-instrumentation-sdk](https://github.com/davidB/tracing-opentelemetry-instrumentation-sdk) | 141 | |   [cbg-ethz](https://github.com/cbg-ethz) / [V-pipe](https://github.com/cbg-ethz/V-pipe) | 130 | |   [orangekame3](https://github.com/orangekame3) / [stree](https://github.com/orangekame3/stree) | 128 | -|   [LukePrior](https://github.com/LukePrior) / [nbn-upgrade-map](https://github.com/LukePrior/nbn-upgrade-map) | 117 | +|   [LukePrior](https://github.com/LukePrior) / [nbn-upgrade-map](https://github.com/LukePrior/nbn-upgrade-map) | 118 | |   [unixorn](https://github.com/unixorn) / [lima-xbar-plugin](https://github.com/unixorn/lima-xbar-plugin) | 114 | |   [practicalli](https://github.com/practicalli) / [spacemacs](https://github.com/practicalli/spacemacs) | 110 | |   [AndreaPontrandolfo](https://github.com/AndreaPontrandolfo) / [sheriff](https://github.com/AndreaPontrandolfo/sheriff) | 104 | @@ -142,7 +142,7 @@ |   [rwaltr](https://github.com/rwaltr) / [home-ops](https://github.com/rwaltr/home-ops) | 28 | |   [arbitraryexecution](https://github.com/arbitraryexecution) / [forta-bot-templates](https://github.com/arbitraryexecution/forta-bot-templates) | 27 | |   [ahmadnassri](https://github.com/ahmadnassri) / [node-pretty-exceptions](https://github.com/ahmadnassri/node-pretty-exceptions) | 26 | -|   [litejs](https://github.com/litejs) / [dom](https://github.com/litejs/dom) | 24 | +|   [litejs](https://github.com/litejs) / [dom](https://github.com/litejs/dom) | 25 | |   [mirakc](https://github.com/mirakc) / [mirakc-arib](https://github.com/mirakc/mirakc-arib) | 24 | |   [Simplifi-ED](https://github.com/Simplifi-ED) / [cloudcost](https://github.com/Simplifi-ED/cloudcost) | 24 | |   [OpenZeppelin](https://github.com/OpenZeppelin) / [compound-monitoring](https://github.com/OpenZeppelin/compound-monitoring) | 22 |