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the pangenome graph builder
Shell 459 45
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
C++ 225 43
implicit pangenome graph
Rust 77 10
linearize and simplify variation graphs using blocked partial order alignment
C++ 59 8
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Genotyping lots of samples with big pangenomes
simple interface for all-way alignment with biWFA
plane sweep filtering genome alignments
fastga rust library
A toolkit for exploring regions of variation in a variation graph
Rust bindings for ONEcode - a data representation format for genomic data
convert variation graph alignments to coverage maps over nodes
online variation graph induction
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