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Our group wants to use pyvista for some 3D visualizations on the pangeo google cloud but we are running into some dependency issues.
I tried to install pyvista using mamba in the command line.
mamba install pyvista
But when I try to import it I end up with this error:
import pyvista
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-2-f7165b0393f4> in <module>
----> 1 from pyvista import examples
2 examples.plot_wave()
/srv/conda/envs/notebook/lib/python3.8/site-packages/pyvista/__init__.py in <module>
5
6 from pyvista._version import __version__
----> 7 from pyvista.plotting import *
8 from pyvista.utilities import *
9 from pyvista.core import *
/srv/conda/envs/notebook/lib/python3.8/site-packages/pyvista/plotting/__init__.py in <module>
4 string_to_rgb, PARAVIEW_BACKGROUND)
5 from .export_vtkjs import export_plotter_vtkjs, get_vtkjs_url
----> 6 from .helpers import plot, plot_arrows, plot_compare_four, plot_itk
7 from .itkplotter import PlotterITK
8 from .plotting import BasePlotter, Plotter, close_all
/srv/conda/envs/notebook/lib/python3.8/site-packages/pyvista/plotting/helpers.py in <module>
5
6 import pyvista
----> 7 from pyvista.utilities import is_pyvista_dataset, assert_empty_kwargs
8 from .plotting import Plotter
9 from .theme import rcParams
/srv/conda/envs/notebook/lib/python3.8/site-packages/pyvista/utilities/__init__.py in <module>
1 """Utilities routines."""
----> 2 from .errors import (GPUInfo, Observer, Report,
3 assert_empty_kwargs, get_gpu_info, send_errors_to_logging,
4 set_error_output_file, check_valid_vector)
5 from .features import *
/srv/conda/envs/notebook/lib/python3.8/site-packages/pyvista/utilities/errors.py in <module>
10
11 import pyvista
---> 12 from pyvista import _vtk
13
14 def set_error_output_file(filename):
/srv/conda/envs/notebook/lib/python3.8/site-packages/pyvista/_vtk.py in <module>
38 from vtkmodules.vtkRenderingVolume import (vtkFixedPointVolumeRayCastMapper,
39 vtkGPUVolumeRayCastMapper)
---> 40 from vtkmodules.vtkRenderingVolumeOpenGL2 import (vtkOpenGLGPUVolumeRayCastMapper,
41 vtkSmartVolumeMapper)
42 from vtkmodules.vtkRenderingOpenGL2 import (vtkOpenGLHardwareSelector,
ImportError: libGL.so.1: cannot open shared object file: No such file or directory
I realize that a full install of pyvista is probably making the notebook image huge, but is there a way to install those dependencies, so that users can install a running pyvista version?
I found this issue (conda-forge/pygridgen-feedstock#10 (comment)) raised by @rsignell-usgs, but I wasn't able to use apt
due to a permission error:
apt install libgl1-mesa-glx
E: Could not open lock file /var/lib/dpkg/lock-frontend - open (13: Permission denied)
E: Unable to acquire the dpkg frontend lock (/var/lib/dpkg/lock-frontend), are you root?
Any help with this would be greatly appreciated.
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