Bump dependency versions for CI builds

- Update numpy from 1.14.6 to 1.16.6
- Build for macos 10.13
- Build on manylinux2010 instead of manylinux1
- Python 3.7 on readthedocs instead of 3.6

Author: pavlin-policar

.ci/build_wheels.sh

@@ -8,13 +8,13 @@ echo "Building for ${PYBIN}..."
 ${PYBIN}/pip install --user cython
 
 # Numpy must be available for openTSNE to be built
-${PYBIN}/pip install --user numpy==1.14.6
+${PYBIN}/pip install --user numpy==1.16.6
 
 # List installed dependency versions
 ${PYBIN}/pip freeze
 
 # Force wheel to use old version of numpy, otherwise it tries to download latest version
-echo numpy==1.14.6 > requirements_numpy.txt
+echo numpy==1.16.6 > requirements_numpy.txt
 # Compile openTSNE wheels
 ${PYBIN}/pip wheel -w wheelhouse/ -r requirements_numpy.txt .
 

azure-pipelines-release.yml

@@ -1,6 +1,5 @@
 variables:
   AZURE_BUILD: true
-  MACOSX_DEPLOYMENT_TARGET: '10.6'
 
 trigger:
   tags:
@@ -52,11 +51,14 @@ jobs:
           architecture: 'x64'
         displayName: 'Use Python $(python.version)'
 
+      - script: env
+        displayName: 'List enviromental variables'
+
       - script: |
           python -m pip install --upgrade pip
           python -m pip install setuptools wheel pytest
           python -m pip install cython
-          python -m pip install numpy==1.14.6
+          python -m pip install numpy==1.16.6
         displayName: 'Install job dependencies'
 
       - script: python -m pip freeze
@@ -124,8 +126,8 @@ jobs:
           python.version: '3.9'
 
     container:
-      image: quay.io/pypa/manylinux1_x86_64:latest
-      options: -e PLAT=manylinux1_x86_64
+      image: quay.io/pypa/manylinux2010_x86_64:latest
+      options: -e PLAT=manylinux2010_x86_64
 
     steps:
       - bash: ls -R /opt/python
@@ -193,7 +195,7 @@ jobs:
           python -m pip install --upgrade pip
           python -m pip install setuptools wheel pytest
           python -m pip install cython
-          python -m pip install numpy==1.14.6
+          python -m pip install numpy==1.16.6
         displayName: 'Install job dependencies'
 
       - script: python -m pip freeze

azure-pipelines.yml

@@ -57,6 +57,9 @@ jobs:
       architecture: 'x64'
     displayName: 'Use Python $(python.version)'
 
+  - script: env
+    displayName: 'List enviromental variables'
+
   - script: |
       python -m pip install --upgrade pip
       python -m pip install flake8 pytest

readthedocs.yml

@@ -2,7 +2,7 @@ build:
   image: latest
 
 python:
-  version: 3.6
+  version: 3.7
   setup_py_install: true
 
 requirements_file: docs/requirements-doc.txt

setup.py

@@ -158,10 +158,10 @@ def build_extensions(self):
         elif compiler == "msvc":
             annoy_ext.extra_compile_args += ["/std:c++14"]
 
-        # Annoy #349: something with OS X Mojave causes libstd not to be found
+        # Set minimum deployment version for MacOS
         if compiler == "unix" and platform.system() == "Darwin":
-            annoy_ext.extra_compile_args += ["-mmacosx-version-min=10.12"]
-            annoy_ext.extra_link_args += ["-stdlib=libc++", "-mmacosx-version-min=10.12"]
+            extra_compile_args += ["-mmacosx-version-min=10.12"]
+            extra_link_args += ["-stdlib=libc++", "-mmacosx-version-min=10.12"]
 
         # We don't want the compiler to optimize for system architecture if
         # we're building packages to be distributed by conda-forge, but if the
@@ -304,7 +304,7 @@ def readme():
     packages=setuptools.find_packages(include=["openTSNE", "openTSNE.*"]),
     python_requires=">=3.6",
     install_requires=[
-        "numpy>=1.14.6",
+        "numpy>=1.16.6",
         "scikit-learn>=0.20",
         "scipy",
     ],