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IshaanDesaiIshaanDesai
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Merge pull request #156 from precice/micro-manager-v0.6.0
Release v0.6.0
2 parents 8c3821e + 768fcfe commit ec6bbf1

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‎.github/workflows/run-adaptivity-test.yml‎

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‎.github/workflows/run-adaptivity-tests-parallel.yml‎

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name: Test adaptivity functionality in parallel
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on:
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push:
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branches:
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- main
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- develop
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pull_request:
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branches:
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- "*"
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jobs:
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adaptivity_integration_parallel_tests:
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name: Adaptivity tests in parallel
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runs-on: ubuntu-latest
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container: precice/precice:nightly
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steps:
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- name: Checkout repository
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uses: actions/checkout@v4
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with:
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path: micro-manager
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- name: Install sudo for MPI
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working-directory: micro-manager
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run: |
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apt-get -qq update
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apt-get -qq install sudo
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- name: Use mpi4py
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uses: mpi4py/setup-mpi@v1
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- name: Install dependencies
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working-directory: micro-manager
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run: |
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apt-get -qq update
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apt-get -qq install python3-dev git python3-venv pkg-config
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- name: Create a virtual environment and install Micro Manager in it
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working-directory: micro-manager
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run: |
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python3 -m venv .venv
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. .venv/bin/activate
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pip install .
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- name: Run integration test with global adaptivity in parallel
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timeout-minutes: 3
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd tests/integration/test_unit_cube/
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mpiexec -n 2 --allow-run-as-root micro-manager-precice micro-manager-config-global-adaptivity-parallel.json &
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python3 unit_cube.py 2
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- name: Run parallel unit tests
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd tests/unit
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mpiexec -n 2 --allow-run-as-root python3 -m unittest test_adaptivity_parallel.py

‎.github/workflows/run-adaptivity-tests-serial.yml‎

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name: Test adaptivity functionality in serial
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on:
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push:
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branches:
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- main
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- develop
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pull_request:
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branches:
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- "*"
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jobs:
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adaptivity_serial_tests:
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name: Adaptivity tests in serial
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runs-on: ubuntu-latest
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container: precice/precice:nightly
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steps:
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- name: Checkout repository
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uses: actions/checkout@v4
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with:
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path: micro-manager
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- name: Install dependencies
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working-directory: micro-manager
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run: |
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apt-get -qq update
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apt-get -qq install python3-dev python3-venv git pkg-config
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- name: Create a virtual environment and install the Micro Manager in it
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working-directory: micro-manager
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run: |
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python3 -m venv .venv
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. .venv/bin/activate
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pip install .
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- name: Run integration test with local adaptivity
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timeout-minutes: 3
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd tests/integration/test_unit_cube
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micro-manager-precice micro-manager-config-local-adaptivity.json &
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python3 unit_cube.py 2
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- name: Run integration test with global adaptivity
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timeout-minutes: 3
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd tests/integration/test_unit_cube
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micro-manager-precice micro-manager-config-global-adaptivity.json &
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python3 unit_cube.py 2
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- name: Run adaptivity unit tests in serial
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd tests/unit
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python3 -m unittest test_adaptivity_serial.py

‎.github/workflows/run-domain-decomposition-tests.yml‎

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branches:
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- "*"
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jobs:
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domain_decomposition_integration_tests:
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name: Run domain decomposition integration tests
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runs-on: ubuntu-latest
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container: precice/precice:nightly
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steps:
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- name: Checkout repository
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uses: actions/checkout@v4
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with:
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path: micro-manager
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- name: Install sudo for MPI
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working-directory: micro-manager
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run: |
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apt-get -qq update
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apt-get -qq install sudo
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- name: Use mpi4py
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uses: mpi4py/setup-mpi@v1
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- name: Install Dependencies
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working-directory: micro-manager
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run: |
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apt-get -qq update
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apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config
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pip3 install --upgrade pip
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- name: Install micro-manager
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working-directory: micro-manager
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run: pip3 install .
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- name: Run integration test (2 processes)
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timeout-minutes: 3
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working-directory: micro-manager/tests/integration/test_unit_cube
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run: |
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mpiexec -n 2 --allow-run-as-root micro-manager-precice micro-manager-config-parallel-1.json &
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python3 unit_cube.py
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- name: Run integration test (6 processes)
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timeout-minutes: 3
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working-directory: micro-manager/tests/integration/test_unit_cube
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run: |
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mpiexec -n 6 --oversubscribe --allow-run-as-root micro-manager-precice micro-manager-config-parallel-2.json &
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python3 unit_cube.py
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domain_decomposition_unit_tests:
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name: Run domain decomposition unit tests
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runs-on: ubuntu-latest
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working-directory: micro-manager
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run: |
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apt-get -qq update
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apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config
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pip3 install --upgrade pip
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apt-get -qq install python3-dev python3-venv git pkg-config
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- name: Install Micro Manager
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- name: Create a virtual environment and install the Micro Manager in it
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working-directory: micro-manager
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run: pip3 install --user .
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run: |
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python3 -m venv .venv
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. .venv/bin/activate
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pip install .
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- name: Run unit tests
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working-directory: micro-manager/tests/unit
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run: python3 -m unittest test_domain_decomposition.py
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd tests/unit
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python3 -m unittest test_domain_decomposition.py

‎.github/workflows/run-macro-micro-dummy.yml‎

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working-directory: micro-manager
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run: |
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apt-get -qq update
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apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config
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apt-get -qq install sudo
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pip3 install --upgrade pip
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apt-get -qq install python3-dev python3-venv git pkg-config
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- name: Install micro-manager
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- name: Create a virtual environment and install Micro Manager in it
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timeout-minutes: 6
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working-directory: micro-manager
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run: |
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pip3 install .
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python3 -m venv .venv
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. .venv/bin/activate
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pip install .
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- name: Run python macro-micro dummy
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- name: Run python dummy
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timeout-minutes: 3
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working-directory: micro-manager/examples
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd examples/
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micro-manager-precice micro-manager-python-config.json &
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python3 macro_dummy.py
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python3 macro_dummy.py no_adaptivity
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./clean-example.sh
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- name: Run adaptive python macro-micro dummy
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- name: Run python dummy with adaptivity
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timeout-minutes: 3
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working-directory: micro-manager/examples
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd examples/
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micro-manager-precice micro-manager-python-adaptivity-config.json &
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python3 macro_dummy.py
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python3 macro_dummy.py adaptivity
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./clean-example.sh
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- name: Run c++ macro-micro dummy
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- name: Run C++ dummy
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timeout-minutes: 3
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working-directory: micro-manager/examples
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working-directory: micro-manager
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run: |
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cd cpp-dummy/
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. .venv/bin/activate
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cd examples/cpp-dummy/
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pip install pybind11
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c++ -O3 -Wall -shared -std=c++11 -fPIC $(python3 -m pybind11 --includes) micro_cpp_dummy.cpp -o micro_dummy$(python3-config --extension-suffix)
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cd ../
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micro-manager-precice micro-manager-cpp-config.json &
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python3 macro_dummy.py
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python3 macro_dummy.py no_adaptivity
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./clean-example.sh
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- name: Run adaptive c++ macro-micro dummy
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- name: Run adaptive C++ dummy
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timeout-minutes: 3
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working-directory: micro-manager/examples
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working-directory: micro-manager
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run: |
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. .venv/bin/activate
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cd examples/
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micro-manager-precice micro-manager-cpp-adaptivity-config.json &
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python3 macro_dummy.py
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python3 macro_dummy.py adaptivity
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./clean-example.sh

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