R-studio Render button gives GIT error 128 #8
Description
I followed the tutorial and copied the manuscript-template to a public repository [email protected]:Fpadt/manuscript.git.
R-Studio Render button
When I use the Render button in R-studio i get the following in my Background jobs window:
`==> quarto preview index.qmd --to html --no-watch-inputs --no-browse
processing file: index.qmd
output file: index.knit.md
Rendering HTML preview [index.qmd]
ERROR: There is an error while retrieving information from remote 'origin'.
Git error: [email protected]: Permission denied (publickey).
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
.
Git status code: 128.
Stack trace:
at gitHubContext (file:///C:/PROGRA1/Quarto/bin/quarto.js:82040:31)1/Quarto/bin/quarto.js:104042:39)
at eventLoopTick (ext:core/01_core.js:175:7)
at async Object.filterParams (file:///C:/PROGRA
at async projectFilterParams (file:///C:/PROGRA1/Quarto/bin/quarto.js:52099:45)1/Quarto/bin/quarto.js:51862:12)
at async filterParamsJson (file:///C:/PROGRA
at async runPandoc (file:///C:/PROGRA1/Quarto/bin/quarto.js:78304:24)1/Quarto/bin/quarto.js:79499:26)
at async renderPandoc (file:///C:/PROGRA
at async pandocRenderNb (file:///C:/PROGRA1/Quarto/bin/quarto.js:103793:29)1/Quarto/bin/quarto.js:103836:40)
at async Object.onRender (file:///C:/PROGRA
at async renderFileInternal (file:///C:/PROGRA~1/Quarto/bin/quarto.js:87112:17)`
Terminal
When I use in the TERMINAL window the statement:
quarto preview index.qmd --to html --no-watch-inputs --no-browse
It works and I get the output:
`quarto preview index.qmd --to html --no-watch-inputs --no-browse
processing file: index.qmd
|............... | 29% [unnamed-chunk-1]
|.............................. | 57% [fig-timeline]
|............................................. | 86% [unnamed-chunk-2]
output file: index.knit.md
Rendering HTML preview [index.qmd]
pandoc
to: html
output-file: C:\RW\manuscript\index.html
standalone: true
section-divs: true
html-math-method: mathjax
wrap: none
default-image-extension: png
toc: true
number-sections: true
variables: {}
metadata
document-css: false
link-citations: true
date-format: long
lang: en
manuscript:
article: index.qmd
notebooks:
- notebook: index.qmd
title: Article Notebook
order: 9999
- notebook: notebooks/explore-earthquakes.qmd
mecaFile: index-meca.zip
notebook-preview-options:
back: true
theme: cosmo
title-block-style: manuscript
lightbox: auto
comments:
hypothesis: true
title: La Palma Earthquakes
author:
- name: Steve Purves
orcid: 0000-0002-0760-5497
corresponding: true
email: [email protected]
roles:
- Investigation
- Project administration
- Software
- Visualization
affiliations:
- Curvenote
- name: Rowan Cockett
orcid: 0000-0002-7859-8394
corresponding: false
roles: []
affiliations:
- Curvenote
keywords:
- La Palma
- Earthquakes
abstract: |
In September 2021, a significant jump in seismic activity on the island of La Palma
(Canary Islands, Spain) signaled the start of a volcanic crisis that still continues a
t the time of writing. Earthquake data is continually collected and published by the In
stituto Geográphico Nacional (IGN). ...
plain-language-summary: |
Earthquake data for the island of La Palma from the September 2021 eruption is foun
d ...
key-points:
- A web scraping script was developed to pull data from the Instituto Geogràphico N
acional into a machine-readable form for analysis
- Earthquake events on La Palma are consistent with the presence of both mantle and
crustal reservoirs.
date: last-modified
bibliography:
- references.bib
citation:
container-title: Earth and Space Science
google-scholar: true
toc-location: left
clear-hidden-classes: none
remove-hidden: all
unroll-markdown-cells: true
Output created: _manuscript\index.html
Preparing to preview
Watching files for changes
Browse at http://localhost:3141/
Rendering HTML preview [index.qmd]
GET: /
`
quarto -v
1.7.27
R.version
_
platform x86_64-w64-mingw32
arch x86_64
os mingw32
crt ucrt
system x86_64, mingw32
status
major 4
minor 5.0
year 2025
month 04
day 11
svn rev 88135
language R
version.string R version 4.5.0 (2025-04-11 ucrt)
nickname How About a Twenty-Six
RStudio 2024.12.1+563 "Kousa Dogwood" Release (27771613951643d8987af2b2fb0c752081a3a853, 2025-02-02) for windows
Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) RStudio/2024.12.1+563 Chrome/126.0.6478.234 Electron/31.7.7 Safari/537.36, Quarto 1.7.27 (C:/Program Files/Quarto/bin/quarto.exe)