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design testing procedures #10

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paularstrpo opened this issue May 16, 2018 · 1 comment
Open

design testing procedures #10

paularstrpo opened this issue May 16, 2018 · 1 comment
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@paularstrpo
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paularstrpo commented May 16, 2018

Design procedures for testing the analysis workflow and comparing it to the edgeR/limma/Glimma R implementation so that we can ensure reproducibility, test performance, features, parity, upgrades, etc.

This could possibly include things such as:

  • reproducing DGE analysis from published studies in both the R workflows and the python workflows.
  • performing DGE analysis on publicly available datasets such as human cell line data, public data from GEO, etc, as long as the datasets are openly available to use.
@eegk
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eegk commented May 16, 2018

This should be modifiable for the users. (See normalization methods)

@veena-v-g veena-v-g self-assigned this Jun 14, 2018
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