Trouble installing ps from the source on RHEL 7 #171
Description
I am exploring ps_fs_info() from #165 (thanks!) and would like to try it out on a RHEL7 machine. Unfortunately, I am having trouble installing 83ea0c9 from the source.
> remotes::install_github("r-lib/ps")
Using github PAT from envvar GITHUB_PAT
Downloading GitHub repo r-lib/ps@HEAD
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file ‘/tmp/Rtmpv6DEoP/remotes190615c178d6/r-lib-ps-83ea0c9/DESCRIPTION’ (1.3s)
─ preparing ‘ps’:
✔ checking DESCRIPTION meta-information ...
─ cleaning src
─ running ‘cleanup’
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘ps_1.7.7.9000.tar.gz’
Warning: invalid uid value replaced by that for user 'nobody'
Installing package into ‘/CENSORED/.R/4.3.2’
(as ‘lib’ is unspecified)
* installing *source* package ‘ps’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
gcc -g -O2 -L/opt/rh/devtoolset-12/root/usr/local/lib64 -L/CENSORED/intel/intel-2020/compilers_and_libraries/linux/mkl/lib/intel64 -Wall px.c -o px
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c init.c -o init.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c common.c -o common.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c extra.c -o extra.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c posix.c -o posix.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c linux.c -o linux.o
gcc -I"/CENSORED/R-4.3.2/lib64/R/include" -DNDEBUG -I/opt/rh/devtoolset-12/root/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o
api-linux.c: In function ‘psll_wait’:
api-linux.c:1466:26: error: ‘SYS_pidfd_open’ undeclared (first use in this function); did you mean ‘SYS_mq_open’?
1466 | int testfd = syscall(SYS_pidfd_open, getpid(), /* flags= */ 0);
| ^~~~~~~~~~~~~~
| SYS_mq_open
api-linux.c:1466:26: note: each undeclared identifier is reported only once for each function it appears in
make: *** [/CENSORED/R-4.3.2/lib64/R/etc/Makeconf:180: api-linux.o] Error 1
ERROR: compilation failed for package ‘ps’
* removing ‘/CENSORED/.R/4.3.2/ps’
Warning message:
In i.p(...) :
installation of package ‘/tmp/Rtmpv6DEoP/file19061aac4347/ps_1.7.7.9000.tar.gz’ had non-zero exit statusSession info:
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux
Matrix products: default
BLAS/LAPACK: /CENSORED/intel/intel-2020/compilers_and_libraries_2020.0.166/linux/mkl/lib/intel64_lin/libmkl_gf_lp64.so; LAPACK version 3.7.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: CENSORED
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] processx_3.8.2 compiler_4.3.2 R6_2.5.1 rprojroot_2.0.4
[5] cli_3.6.1 prettyunits_1.2.0 tools_4.3.2 curl_5.1.0
[9] crayon_1.5.2 remotes_2.4.2.1 desc_1.4.3 callr_3.7.3
[13] ps_1.7.5 pkgbuild_1.4.2