Rules to implement: 1. [Blue crab](https://github.com/Psy-Fer/blue-crab#usage) * add `blue-crab` to pip installs * `blue-crab p2s example.pod5 -o example.blow5` 2. [f5c](https://github.com/hasindu2008/f5c#quick-start) * add `f5c` to conda * `f5c resquiggle --rna -c ${FASTQ} ${SIGNAL_FILE} -o ${ALIGNMENT}` * use the cuda version `f5c_x86_64_linux_cuda` 3. [squigualizer](https://github.com/hiruna72/squigualiser#notes) * run interactively